View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-1 (Length: 405)
Name: Solexa-NF5886-1
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-1 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 351
Target Start/End: Original strand, 1828480 - 1828833
Alignment:
| Q |
10 |
tataattgaagaaatgtggtgtagtgcccagttttcgaaaacgcaatttggttacaccctccactaatctaaactcacgcaagacatatatgaaaattga |
109 |
Q |
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| T |
1828480 |
tataattgaagaaatgtggcgtagtgcccagttttcgaaaacgcaatttggttacaccctccactaatctaaactcacgcaagacatatatgaaaattga |
1828579 |
T |
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| Q |
110 |
aattatgtgggtgtgcatgtgtaaaatcgtttcaagaatttagtttaggtgggtgtacat--------------------ataaaacgcatcaaattctc |
189 |
Q |
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| T |
1828580 |
aattatgtg--------tgtgcaaaatcgtttcaagaatttagtttaggtgggtgtacatgcattctacacatcgaaaaaataaaaagcatcaaattctc |
1828671 |
T |
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| Q |
190 |
aggnnnnnnnttgaacaccgaaaatggatagtgaaatgagttcaaattgtgcatcccgcggcattttctcttgttccatcccttttattatcttcagtga |
289 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1828672 |
aggaaaaaaattgaacaccgaaaatggacagtgaaatgagttcaaattgtgcatcccgcagcattttctcttgttccatcccttttattatcttcagtga |
1828771 |
T |
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| Q |
290 |
tttttcatcttgcatgatctttcaaatttattcaatgctaccactcattcactttcttctca |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1828772 |
tttttcatcttgcatgatctttcaaatttattcaatgctaccactcattcactttcttctca |
1828833 |
T |
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