View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5886-13 (Length: 194)

Name: Solexa-NF5886-13
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5886-13
Solexa-NF5886-13
[»] chr4 (7 HSPs)
chr4 (78-191)||(8747680-8747793)
chr4 (87-191)||(8749003-8749106)
chr4 (89-191)||(33997852-33997954)
chr4 (87-147)||(8896953-8897013)
chr4 (87-191)||(40168637-40168741)
chr4 (88-145)||(31435854-31435910)
chr4 (89-145)||(55986311-55986367)
[»] chr7 (6 HSPs)
chr7 (89-191)||(35080283-35080385)
chr7 (87-191)||(35081557-35081661)
chr7 (87-147)||(9805426-9805486)
chr7 (87-137)||(23621991-23622041)
chr7 (92-136)||(3769632-3769676)
chr7 (102-147)||(3292727-3292772)
[»] chr5 (7 HSPs)
chr5 (89-191)||(5504092-5504194)
chr5 (87-191)||(121347-121451)
chr5 (88-191)||(124486-124588)
chr5 (88-191)||(5502917-5503019)
chr5 (87-142)||(3597321-3597376)
chr5 (87-191)||(24242015-24242120)
chr5 (89-145)||(3598924-3598980)
[»] chr3 (14 HSPs)
chr3 (89-191)||(32829740-32829842)
chr3 (88-191)||(32831046-32831149)
chr3 (1-51)||(41816517-41816567)
chr3 (88-191)||(51220559-51220661)
chr3 (89-147)||(10584082-10584140)
chr3 (89-145)||(26722533-26722589)
chr3 (89-147)||(51219462-51219520)
chr3 (87-147)||(53157176-53157235)
chr3 (88-145)||(26723906-26723963)
chr3 (78-144)||(19975547-19975613)
chr3 (87-137)||(21326318-21326368)
chr3 (87-145)||(26633603-26633661)
chr3 (87-145)||(40836426-40836484)
chr3 (87-147)||(48907291-48907351)
[»] chr8 (5 HSPs)
chr8 (87-191)||(13882653-13882757)
chr8 (88-191)||(13883826-13883927)
chr8 (87-191)||(38612217-38612321)
chr8 (87-191)||(38613373-38613477)
chr8 (80-145)||(21930049-21930114)
[»] chr2 (8 HSPs)
chr2 (87-191)||(10851911-10852014)
chr2 (87-147)||(27552450-27552510)
chr2 (89-191)||(27553763-27553865)
chr2 (89-145)||(28851674-28851730)
chr2 (88-191)||(45412334-45412437)
chr2 (92-191)||(10853101-10853200)
chr2 (87-145)||(38716192-38716250)
chr2 (87-145)||(45413479-45413537)
[»] chr1 (8 HSPs)
chr1 (89-147)||(46312065-46312123)
chr1 (89-147)||(2999491-2999549)
chr1 (89-147)||(46525842-46525900)
chr1 (87-191)||(3000169-3000273)
chr1 (88-136)||(14512669-14512717)
chr1 (91-137)||(46524542-46524588)
chr1 (87-191)||(14204835-14204940)
chr1 (88-145)||(14601740-14601797)
[»] chr6 (6 HSPs)
chr6 (89-145)||(10120175-10120231)
chr6 (92-147)||(22417661-22417716)
chr6 (87-191)||(20409065-20409169)
chr6 (88-191)||(20410173-20410276)
chr6 (87-145)||(16859334-16859392)
chr6 (87-191)||(22418893-22418997)


Alignment Details
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 78 - 191
Target Start/End: Original strand, 8747680 - 8747793
Alignment:
Q  78 aataaatagtaggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgtt 177  Q
    |||| ||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||        |||||||||| |||||||||||    
T  8747680 aatatatattaggctaaactacagttttgaccccttaagtttgccaatgttgcgattttggccccctaataaaaaaaatgaatattttgccccctatgtt 8747779  T
Q  178 ttagcccctttgca 191  Q
    ||||||||||||||    
T  8747780 ttagcccctttgca 8747793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 8749106 - 8749003
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccct 186  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||        | |||||||| ||||||||||||||||||||    
T  8749106 taggctaaactacacttttgaccccttaagtttgccaatgttgcgattttggccccctaat-aaaaaaataaatattttgccccctatgttttagcccct 8749008  T
Q  187 ttgca 191  Q
    |||||    
T  8749007 ttgca 8749003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 89 - 191
Target Start/End: Complemental strand, 33997954 - 33997852
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagccccttt 188  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||        |||| ||||| ||||||| | ||||||||||||    
T  33997954 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttgaccccctaataaaaaaaatgaaaattttgccccctaagatttagccccttt 33997855  T
Q  189 gca 191  Q
    |||    
T  33997854 gca 33997852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 8897013 - 8896953
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaat 147  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||||||||  ||||||||    
T  8897013 taggctaaactacagttttgactccctaagtttgccaatgttacgattttggtcccctaat 8896953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 40168637 - 40168741
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccct 186  Q
    ||||||||||| || |||||||||||||| |||  ||||| |||||||||| ||||||| |        |||| |||| | |||||||||||||||||||    
T  40168637 taggctaaactgcagttttgaccccctaacttttacaatggtgcgattttggccccctattaaaaaaaatgaaaatttaaacccctatgttttagcccct 40168736  T
Q  187 ttgca 191  Q
    |||||    
T  40168737 ttgca 40168741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 31435910 - 31435854
Alignment:
Q  88 aggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccccta 145  Q
    ||||||||||||| ||||| |||  || ||||||||||||||||||||||||||||||    
T  31435910 aggctaaactacagttttggccct-tatgtttgccaatgttgcgattttgacccccta 31435854  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 55986367 - 55986311
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccccta 145  Q
    ||||||||| || |||| ||||||||| |||  ||||| ||||||||||||||||||    
T  55986367 ggctaaactgcagttttaaccccctaactttcacaatggtgcgattttgacccccta 55986311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 35080283 - 35080385
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagccccttt 188  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||        |||||||||| ||||||||||||||||||||||    
T  35080283 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 35080382  T
Q  189 gca 191  Q
    |||    
T  35080383 gca 35080385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 35081661 - 35081557
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccct 186  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||        |||||||||| ||||||||||||||||||||    
T  35081661 taggctaaactacagttttgaccccctaagtttgtcaatgttgcgattttggcgccctaataaaaaaaatgaatattttgccccctatgttttagcccct 35081562  T
Q  187 ttgca 191  Q
    |||||    
T  35081561 ttgca 35081557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 9805486 - 9805426
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaat 147  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||    
T  9805486 taggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggccctctaat 9805426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 23622041 - 23621991
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttg 137  Q
    |||||||||||||| ||||| || |||||||||||||||||||||||||||    
T  23622041 taggctaaactacagttttggcctcctaagtttgccaatgttgcgattttg 23621991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 3769676 - 3769632
Alignment:
Q  92 taaactacaattttgaccccctaagtttgccaatgttgcgatttt 136  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||    
T  3769676 taaactataattttgaccccctaagtttcacaatgttgcgatttt 3769632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 3292727 - 3292772
Alignment:
Q  102 ttttgaccccctaagtttgccaatgttgcgattttgaccccctaat 147  Q
    ||||| |||||||| |||||||  ||||||||||||||||||||||    
T  3292727 ttttggccccctaactttgccatagttgcgattttgaccccctaat 3292772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 1e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 89 - 191
Target Start/End: Complemental strand, 5504194 - 5504092
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagccccttt 188  Q
    |||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||        |||||||||| ||||||||||||||||||||||    
T  5504194 ggctaaactacagttttgacctcttaagtttgccaatgttgcgattttgaccccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 5504095  T
Q  189 gca 191  Q
    |||    
T  5504094 gca 5504092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 121347 - 121451
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccct 186  Q
    |||||||||||||| ||||||| | |||| |||||||||||||| ||||||||||||||||        |||||||||| |||||||| |||||||||||    
T  121347 taggctaaactacagttttgacactctaaatttgccaatgttgcaattttgaccccctaataaaaaaaatgaatattttgccccctatattttagcccct 121446  T
Q  187 ttgca 191  Q
    |||||    
T  121447 ttgca 121451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 124588 - 124486
Alignment:
Q  88 aggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccctt 187  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||        |||||||||| |||||||| ||||||||||||    
T  124588 aggctaaactacagttttgacctcttaagtttgccaatgttgcgattttggccccctaat-aaaaaaatgaatattttgccccctatattttagcccctt 124490  T
Q  188 tgca 191  Q
    ||||    
T  124489 tgca 124486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 5502917 - 5503019
Alignment:
Q  88 aggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccctt 187  Q
    ||||||||||||| |||||||||  |||||||||||||||||| |||||| |||||||||        |||||||||| |||||||||||||| ||||||    
T  5502917 aggctaaactacagttttgaccct-taagtttgccaatgttgcaattttggccccctaataaaaaaaatgaatattttgccccctatgttttaacccctt 5503015  T
Q  188 tgca 191  Q
    ||||    
T  5503016 tgca 5503019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 3597321 - 3597376
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccc 142  Q
    |||||||||||||| ||||| |||||||||||| | ||||||||||||||| ||||    
T  3597321 taggctaaactacagttttggccccctaagtttactaatgttgcgattttggcccc 3597376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 24242015 - 24242120
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaa-tnnnnnnnntgaatattttaccccctatgttttagcccc 185  Q
    ||||||||||| || |||||||||||||| |||  ||| | ||||||||||||||||||| |        |||| |||| | ||||||||||||||||||    
T  24242015 taggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttgaccccctaattaaaaaaaatgaaaatttaaacccctatgttttagcccc 24242114  T
Q  186 tttgca 191  Q
    ||||||    
T  24242115 tttgca 24242120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 3598980 - 3598924
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccccta 145  Q
    |||||||||||| |||||  ||||||| ||| ||||||||||||||||| |||||||    
T  3598980 ggctaaactacagttttggtcccctaaatttaccaatgttgcgattttggcccccta 3598924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 32829740 - 32829842
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagccccttt 188  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||        |||||||||| ||||||||||||||||||||||    
T  32829740 ggctaaactacagttttgaccccctaagtttgccaattttgcgattttggccccctaataaaaaaaatgaatattttgccccctatgttttagccccttt 32829839  T
Q  189 gca 191  Q
    |||    
T  32829840 gca 32829842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 32831149 - 32831046
Alignment:
Q  88 aggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccctt 187  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||        ||||| |||| |||||||||||||||||||||    
T  32831149 aggctaaactacagttttgaccccctatgtttgtcaatgttgcgattttgaccctctaataaaaaaaatgaattttttgccccctatgttttagcccctt 32831050  T
Q  188 tgca 191  Q
    ||||    
T  32831049 tgca 32831046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41816517 - 41816567
Alignment:
Q  1 gagtggcacaattgtaacaccggttacaatcgcaagctttgggtacgagtt 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41816517 gagtggcacaattgtaacaccggttacaatcgcaagctttgggtacgagtt 41816567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 51220661 - 51220559
Alignment:
Q  88 aggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccctt 187  Q
    ||||||||||||| |||||||||| |||||||| |||||||||||||||  |||||||||        |||||||||| |||||||||||||||||||||    
T  51220661 aggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttagccccctaat-aaaaaaatgaatattttgccccctatgttttagcccctt 51220563  T
Q  188 tgca 191  Q
    ||||    
T  51220562 tgca 51220559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 10584140 - 10584082
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaat 147  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||    
T  10584140 ggctaaactacagttttgatcccctaagtttgccaatgttgcgattttggccccctaat 10584082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 26722533 - 26722589
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccccta 145  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||||||| |||||||    
T  26722533 ggctaaactacagttttggccccctaagtttaccaatgttgcgattttggcccccta 26722589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 51219462 - 51219520
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaat 147  Q
    |||||||||||| |||||||| |||||||||| ||||||||| |||||| |||||||||    
T  51219462 ggctaaactacagttttgacctcctaagtttgtcaatgttgcaattttggccccctaat 51219520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 53157235 - 53157176
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaat 147  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||| || ||| |||||    
T  53157235 taggctaaactacagttttgacccc-taagtttgccaatgttgcgattctggccctctaat 53157176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 26723963 - 26723906
Alignment:
Q  88 aggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccccta 145  Q
    ||||||||||||| ||||| |||||||||||| | |||||||| |||||| |||||||    
T  26723963 aggctaaactacagttttggccccctaagtttactaatgttgcaattttggcccccta 26723906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 19975613 - 19975547
Alignment:
Q  78 aataaatagtaggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccct 144  Q
    |||||||| |||||| || |||| ||||||||||||||||||   || |||| ||||||||||||||    
T  19975613 aataaataataggcttaattacacttttgaccccctaagttttataaagttgtgattttgaccccct 19975547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 21326318 - 21326368
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttg 137  Q
    |||||||||||||| |||||||||| ||||||| ||||| |||| ||||||    
T  21326318 taggctaaactacacttttgaccccttaagtttaccaatattgcaattttg 21326368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 26633661 - 26633603
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccccta 145  Q
    ||||||||||  || |||| |||||||||||||   |||||||||||||||||||||||    
T  26633661 taggctaaacggcacttttcaccccctaagtttctaaatgttgcgattttgacccccta 26633603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 40836484 - 40836426
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccccta 145  Q
    ||||||||||| || ||||  ||||||||||||   |||||||||||||||||||||||    
T  40836484 taggctaaactgcatttttcgccccctaagttttaaaatgttgcgattttgacccccta 40836426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 48907291 - 48907351
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaat 147  Q
    ||||||||| | || ||||||||||||| ||||   ||||||| |||||||||||||||||    
T  48907291 taggctaaagtgcacttttgaccccctatgtttcaaaatgttgtgattttgaccccctaat 48907351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 13882653 - 13882757
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccct 186  Q
    ||||||||||||||||||||| | |||||||||||||||||||  ||||||||||||||||        |||||||||| ||||||||||||||||||||    
T  13882653 taggctaaactacaattttgatctcctaagtttgccaatgttgtaattttgaccccctaataaaaaaaatgaatattttgccccctatgttttagcccct 13882752  T
Q  187 ttgca 191  Q
    |||||    
T  13882753 ttgca 13882757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 13883927 - 13883826
Alignment:
Q  88 aggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccctt 187  Q
    ||||||||||||| |||||||||| |||||||| |||||||||||||||||  |||||||        ||||||||||  ||||||||||||||||||||    
T  13883927 aggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttga-tccctaataaaaaaaatgaatatttt-gcccctatgttttagcccctt 13883830  T
Q  188 tgca 191  Q
    ||||    
T  13883829 tgca 13883826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 38612217 - 38612321
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccct 186  Q
    ||||||||||| || |||||||||||||| |||  |||||||||||||||| ||||||| |        |||| |||| | |||||||||||||||||||    
T  38612217 taggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggccccctattaaaaaaaatgaaaatttaaacccctatgttttagcccct 38612316  T
Q  187 ttgca 191  Q
    |||||    
T  38612317 ttgca 38612321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 38613477 - 38613373
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccct 186  Q
    ||||||||||| || |||||||||||||| |||  |||||||||||||||| ||||||| |        |||| |||| | |||||||||||||||||||    
T  38613477 taggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggccccctattaaaaaaaatgaaaatttaaacccctatgttttagcccct 38613378  T
Q  187 ttgca 191  Q
    |||||    
T  38613377 ttgca 38613373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 21930114 - 21930049
Alignment:
Q  80 taaatagtaggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccccta 145  Q
    |||||||||||||||||| || ||||  ||| ||||||||   |||||||||||||||||||||||    
T  21930114 taaatagtaggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttgacccccta 21930049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 10851911 - 10852014
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccct 186  Q
    |||||||||||||| |||||||||||||| |||  ||||||||||||||| ||||||| ||        |||| ||||||||||||||||||||||||||    
T  10851911 taggctaaactacagttttgaccccctaactttatcaatgttgcgattttaaccccct-attaaaaaaatgaaaattttaccccctatgttttagcccct 10852009  T
Q  187 ttgca 191  Q
    |||||    
T  10852010 ttgca 10852014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 27552450 - 27552510
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaat 147  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||    
T  27552450 taggctaaactacagttttgaccccctaaatttgccaatgttgcgattttggctccctaat 27552510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 191
Target Start/End: Complemental strand, 27553865 - 27553763
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagccccttt 188  Q
    |||||||||||| |||| ||||||||||||||| ||||||||||||||| || ||||||        |||| ||||| ||||||| | ||||||||||||    
T  27553865 ggctaaactacagttttaaccccctaagtttgctaatgttgcgattttggcctcctaataaaaaaaatgaaaattttgccccctaagatttagccccttt 27553766  T
Q  189 gca 191  Q
    |||    
T  27553765 gca 27553763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 28851730 - 28851674
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccccta 145  Q
    ||||||||| || |||||||||||||| |||  ||||||||||||||||||||||||    
T  28851730 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttgacccccta 28851674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 45412334 - 45412437
Alignment:
Q  88 aggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccctt 187  Q
    |||||||||| || |||||||||||||| |||  ||||| |||||||||||||||||| |        |||| |||| | |||||||| |||||||||||    
T  45412334 aggctaaactgcagttttgaccccctaactttcacaatggtgcgattttgaccccctattaaaaaaaatgaaaatttaaacccctatgatttagcccctt 45412433  T
Q  188 tgca 191  Q
    ||||    
T  45412434 tgca 45412437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 191
Target Start/End: Complemental strand, 10853200 - 10853101
Alignment:
Q  92 taaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccctttgca 191  Q
    ||||||||| |||||||||| ||| |||  ||||||||||||||||||||| || |        |||| ||||| ||||| ||| |||||||||||||||    
T  10853200 taaactacagttttgaccccttaactttatcaatgttgcgattttgaccccttattaaaaaaaatgaaaattttgcccccaatggtttagcccctttgca 10853101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 38716192 - 38716250
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccccta 145  Q
    ||||||||||| || |||| |||| ||||||||   |||||||||||||||||||||||    
T  38716192 taggctaaacttcacttttcaccctctaagttttaaaatgttgcgattttgacccccta 38716250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 45413537 - 45413479
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccccta 145  Q
    ||||||||||| || |||||||||||||| |||  ||||| |||||||||| |||||||    
T  45413537 taggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 45413479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 46312065 - 46312123
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaat 147  Q
    |||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||||    
T  46312065 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctaat 46312123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 2999491 - 2999549
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaat 147  Q
    |||||||||||| ||||||||| |||| |||| ||||||||||||||||| ||||||||    
T  2999491 ggctaaactacagttttgaccctctaactttgtcaatgttgcgattttgatcccctaat 2999549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 46525900 - 46525842
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaat 147  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||||||| || ||||||    
T  46525900 ggctaatctacagttttggccccctaagtttgccaatgttgcgattttggcctcctaat 46525842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 3000273 - 3000169
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccct 186  Q
    |||||||||||||| |||||||||| ||| ||||  |||||||||||||||| || |||||        | || ||||| ||||||| ||||||||||||    
T  3000273 taggctaaactacagttttgaccccttaattttgttaatgttgcgattttgatcctctaataaaaaaaataaaaattttgccccctaagttttagcccct 3000174  T
Q  187 ttgca 191  Q
    |||||    
T  3000173 ttgca 3000169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 14512717 - 14512669
Alignment:
Q  88 aggctaaactacaattttgaccccctaagtttgccaatgttgcgatttt 136  Q
    ||||||||||||| ||||| |||||||||||| | ||||||||||||||    
T  14512717 aggctaaactacagttttggccccctaagtttactaatgttgcgatttt 14512669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 46524542 - 46524588
Alignment:
Q  91 ctaaactacaattttgaccccctaagtttgccaatgttgcgattttg 137  Q
    |||||||||| ||||| |||||||||||| |||||||||| ||||||    
T  46524542 ctaaactacagttttggccccctaagtttaccaatgttgcaattttg 46524588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 14204835 - 14204940
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttacccc-ctatgttttagcccc 185  Q
    |||||||||||||| ||||| |||| || ||||| ||||| |||||||||| ||| |||||        |||| |||||||||| ||| | |||||||||    
T  14204835 taggctaaactacagttttggccccttatgtttgacaatgctgcgattttggccctctaataaaaatattgaaaattttacccctctaagatttagcccc 14204934  T
Q  186 tttgca 191  Q
    ||||||    
T  14204935 tttgca 14204940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 14601797 - 14601740
Alignment:
Q  88 aggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccccta 145  Q
    |||||||||| |  |||| |||||||||||||   |||||||||||||||||||||||    
T  14601797 aggctaaactgcgtttttcaccccctaagttttaaaatgttgcgattttgacccccta 14601740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 10120175 - 10120231
Alignment:
Q  89 ggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccccta 145  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  10120175 ggctaaacaacaattttggccccctaagtttgtcaatgttgcgattttgatccccta 10120231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 22417661 - 22417716
Alignment:
Q  92 taaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaat 147  Q
    ||||||||| |||||||||||||||||||| |||||| |||||||| |||||||||    
T  22417661 taaactacagttttgaccccctaagtttgctaatgttacgattttggccccctaat 22417716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 20409065 - 20409169
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccct 186  Q
    ||||||||||| || |||||||||||||| |||  ||||| |||||||||| ||||||| |        |||| |||| | |||||||||||||||||||    
T  20409065 taggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccccctattaaaaaaaatgaaaatttaaacccctatgttttagcccct 20409164  T
Q  187 ttgca 191  Q
    |||||    
T  20409165 ttgca 20409169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 20410276 - 20410173
Alignment:
Q  88 aggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccctt 187  Q
    |||||||||| || |||||||||||||| |||  ||||| |||||||||||||||||| |        |||| |||| | ||| ||||||||||||||||    
T  20410276 aggctaaactgcagttttgaccccctaacttttacaatggtgcgattttgaccccctattaaaaaaaatgaaaatttaaacccttatgttttagcccctt 20410177  T
Q  188 tgca 191  Q
    ||||    
T  20410176 tgca 20410173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 16859334 - 16859392
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgacccccta 145  Q
    ||||||||||| ||||||| ||||||||| |||  ||||| ||||||||||||||||||    
T  16859334 taggctaaactgcaattttaaccccctaactttcacaatggtgcgattttgacccccta 16859392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 22418997 - 22418893
Alignment:
Q  87 taggctaaactacaattttgaccccctaagtttgccaatgttgcgattttgaccccctaatnnnnnnnntgaatattttaccccctatgttttagcccct 186  Q
    |||||||||||||  ||||| ||||||||||||| ||||||| |||||||   ||||||||        |||| ||||| ||||||| | ||||||||||    
T  22418997 taggctaaactacggttttggccccctaagtttgtcaatgttacgatttttgtcccctaataaaaaaaatgaaaattttgccccctaagatttagcccct 22418898  T
Q  187 ttgca 191  Q
    |||||    
T  22418897 ttgca 22418893  T

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