View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-14 (Length: 186)
Name: Solexa-NF5886-14
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-14 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 160292 - 160470
Alignment:
| Q |
8 |
cgtctatctcaattcaatcaacaatccatgatcaagaactacaaactctatctcgaaaacaaagaacaagaaataagaaaatgttatgcagagaaatttc |
107 |
Q |
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| T |
160292 |
cgtctatctcaattcaatcaacaatccatgatcaagaactacaaactctatctcgaaaacaaagaacaagaaataagaaaatgttatgcagagaaatttc |
160391 |
T |
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| Q |
108 |
ccgacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatcatggaacttttgttgagaaacag |
186 |
Q |
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| T |
160392 |
ccaacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatcatggaacttttgttgagaaacag |
160470 |
T |
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Target: chr8; HSP #2
Raw Score: 159; E-Value: 6e-85
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 151861 - 152035
Alignment:
| Q |
12 |
tatctcaattcaatcaacaatccatgatcaagaactacaaactctatctcgaaaacaaagaacaagaaataagaaaatgttatgcagagaaatttcccga |
111 |
Q |
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| T |
151861 |
tatctcaattcaatcaacaatccatgatcaagatctacaaactctatctcgaaagcaaagaacaacaaataagaaaatgttatgcagagaaatttcccaa |
151960 |
T |
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| Q |
112 |
cataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatcatggaacttttgttgagaaacag |
186 |
Q |
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| T |
151961 |
cataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatcatggaacttttgttgagaaacag |
152035 |
T |
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