View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-16 (Length: 166)
Name: Solexa-NF5886-16
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-16 |
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| [»] scaffold0236 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 25272350 - 25272233
Alignment:
| Q |
8 |
gcaatgcaggtccagcaaccgtaatgatcacaatcgcaacgaccgcaaccgtaatttaaaaccaaggttcacagtattgattgaataattaacaagtttg |
107 |
Q |
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| T |
25272350 |
gcaatgcaggtccagcaaccgtaatgatcacaatcgcaacgaccgcaactgtaatttaaaaccaaggttcacagtattgattgaataattaacaagtttg |
25272251 |
T |
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| Q |
108 |
gatttcaatatatatata |
125 |
Q |
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| T |
25272250 |
aatttcaatatatatata |
25272233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 25272185 - 25272152
Alignment:
| Q |
133 |
ataccaggaaactgacagcagaacctaatccaac |
166 |
Q |
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| T |
25272185 |
ataccaggaaactgacagcagaacctaatccaac |
25272152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 106; Significance: 2e-53; HSPs: 3)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 25901 - 26018
Alignment:
| Q |
8 |
gcaatgcaggtccagcaaccgtaatgatcacaatcgcaacgaccgcaaccgtaatttaaaaccaaggttcacagtattgattgaataattaacaagtttg |
107 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901 |
gcaatgcaggtccagcaaccgtaatgatcaaaatcgcaacgaccgcaactgtaatttaaaaccaaggttcacagtattgattgaataattaacaagtttg |
26000 |
T |
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| Q |
108 |
gatttcaatatatatata |
125 |
Q |
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| T |
26001 |
aatttcaatatatatata |
26018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 25267 - 25354
Alignment:
| Q |
20 |
cagcaaccgtaatgatcacaatcgcaacgaccgcaaccgtaatttaaaaccaaggttcacagtattgattgaataattaacaagtttg |
107 |
Q |
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|||||| | |||||| |||||| ||||||| ||||| |||||||||||||| |||||| ||||||||||||||| | |||||||||| |
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| T |
25267 |
cagcaagcataatgaccacaattgcaacgattgcaactgtaatttaaaaccacggttcaaagtattgattgaatattgaacaagtttg |
25354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 26042 - 26079
Alignment:
| Q |
129 |
agagataccaggaaactgacagcagaacctaatccaac |
166 |
Q |
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| T |
26042 |
agacataccaggaaactgacagcagaacctaatccaac |
26079 |
T |
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