View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5886-2 (Length: 343)
Name: Solexa-NF5886-2
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 342
Target Start/End: Original strand, 38712471 - 38712805
Alignment:
| Q |
8 |
tggtctacggtgcctgcctcagaaaaggggacccacctccaagtctcaccaggcaaaaagaacttgcagatgagctcagagccaaagtgattgacagact |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38712471 |
tggtctacggtgcctgcctcagaaaaggggacccacctccaagtctcaccaggcaaaaagaacttgcagatgagctcagagccaaagtgattgacagact |
38712570 |
T |
|
| Q |
108 |
aatcaattttatttttcatcattaaactaataaattctagtttgtcatacttatcgtgagattatgtagcgtaattagttttctggtgtggacaatcagc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38712571 |
aatcaattttatttttcatcattaaactaataaattctagtttgtcatacttatcgtgaaattatgtagcgtaattagttttctggtgtggacaatcagc |
38712670 |
T |
|
| Q |
208 |
aacatttgtgcaaatagtgctcaaattatatatggctattatatgctgttctttcagtttgatgcgtccaagtctttatgatgggaaaacattattattt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38712671 |
aacatttgtgcaaatagtgctcaaattatatatggctattatatgctgttctttcagtttgatgcgtccaagtctttatgatgggaaaacattattattt |
38712770 |
T |
|
| Q |
308 |
gcaggttgtggatgagtacatccagaggagagtag |
342 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| |
|
|
| T |
38712771 |
gcaggttgtggatgagttcatcaagaggagagtag |
38712805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University