View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-20 (Length: 144)
Name: Solexa-NF5886-20
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-20 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 32783455 - 32783315
Alignment:
| Q |
5 |
ttggtggtggtatt-gtacatttaaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatga |
103 |
Q |
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| T |
32783455 |
ttggtggtggtatttgtacatttaaattgcatgatttagtgcatgatcttgcagtgtatgttgcaagagatgagtttcaattgattgaatttcataatga |
32783356 |
T |
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| Q |
104 |
aaatatactcgagaatgtccttcatctgtcatttattaaaa |
144 |
Q |
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| T |
32783355 |
aaatatactcgagaatgtccttcatctgtcatttattaaaa |
32783315 |
T |
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Target: chr4 (Bit Score: 105; Significance: 8e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 24 - 144
Target Start/End: Original strand, 49352834 - 49352954
Alignment:
| Q |
24 |
tttaaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatgaaaatatactcgagaatgtcc |
123 |
Q |
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| T |
49352834 |
tttaaattgcatgatttggtgcatgatctttcattgtatgttgcaagagatgagtttcaattgttgaaatttcataatgaaaatatactcgagaatgtcc |
49352933 |
T |
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| Q |
124 |
ttcatctgtcatttattaaaa |
144 |
Q |
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| T |
49352934 |
ttcatctgtcatttcttaaaa |
49352954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 49341455 - 49341576
Alignment:
| Q |
23 |
atttaaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatgaaaatatactcgagaatgtc |
122 |
Q |
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| T |
49341455 |
atttaaattgcatgatttagtgcatgatctctcattgtatgttgcaagagatgagtttcaattgttgaaatttcatgatgaaaatatattcgagaatgtc |
49341554 |
T |
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| Q |
123 |
cttcatctgtcatttattaaaa |
144 |
Q |
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|||||| ||||||||||||||| |
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| T |
49341555 |
cttcatttgtcatttattaaaa |
49341576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 19030793 - 19030909
Alignment:
| Q |
24 |
tttaaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatgaaaatatactcgagaatgtcc |
123 |
Q |
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| T |
19030793 |
tttaacttgcatgatttagtgcacgatcttgcattgtatgttgcaaaagatgagtttcagttgttgaaatttcataatgaaaatatatcagagaatattc |
19030892 |
T |
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| Q |
124 |
ttcatctgtcatttatt |
140 |
Q |
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| T |
19030893 |
ttcatctgtcatttatt |
19030909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 4e-33; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 29751222 - 29751337
Alignment:
| Q |
23 |
atttaaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatgaaaatatactcgagaatgtc |
122 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||| |
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| T |
29751222 |
atttaaattgcatgatttagtgcatgatcttgccctatatgttgcaagagatgagtttcaattgctgaaattccataatgaaaatataattaagaatgtt |
29751321 |
T |
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| Q |
123 |
cttcatctgtcattta |
138 |
Q |
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| T |
29751322 |
ctccatttgtcattta |
29751337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 29744183 - 29744304
Alignment:
| Q |
17 |
ttgtacatttaaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatgaaaatatactcgag |
116 |
Q |
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|||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| | ||||| ||||||||||||||| | ||| |
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| T |
29744183 |
ttgtgcatttaaattgcatgatttagtgcatgatcttgccctatatgttgcaagagattagtttcaattgttaaaattccataatgaaaatataattgag |
29744282 |
T |
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| Q |
117 |
aatgtccttcatctgtcattta |
138 |
Q |
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| T |
29744283 |
aatgttctccatttgtcattta |
29744304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 29602072 - 29601957
Alignment:
| Q |
23 |
atttaaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaaatttcataatgaaaatatactcgagaatgtc |
122 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||| | ||||||||||||||| | ||||||| |
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| T |
29602072 |
atttaaattgcatgatttagtgcatgatcttgccctatatgttgccagagatgagtttcaattgctgaaactccataatgaaaatataattaagaatgtt |
29601973 |
T |
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| Q |
123 |
cttcatctgtcattta |
138 |
Q |
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| T |
29601972 |
ctccatttgtcattta |
29601957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 35933824 - 35933788
Alignment:
| Q |
33 |
catgatttagtgcatgatcttgcattgtatgttgcaa |
69 |
Q |
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| T |
35933824 |
catgatttggtgcacgatcttgcattgtatgttgcaa |
35933788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 35158344 - 35158408
Alignment:
| Q |
27 |
aaattgcatgatttagtgcatgatcttgcattgtatgttgcaagagatgagtttcaattgatgaa |
91 |
Q |
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| T |
35158344 |
aaattgcacgatctagtgcatgaccttgcattgtatgtttcaagagacgagtttcaattgttgaa |
35158408 |
T |
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