View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5886-3 (Length: 278)
Name: Solexa-NF5886-3
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 8748666 - 8748767
Alignment:
| Q |
7 |
agaaaccgcttgtgtgcaaagttgttggtaggacctagggctaatgttagtgtttgaatttgcttgactttcgtaagaaatttggttatggatcttgtgg |
106 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8748666 |
agaaaccacttgtgtgcaaggttgttgctaggacctagggctaatgttagtgtttgaatttgcttgactttcgtaagaaatttggttatggatcttgtgg |
8748765 |
T |
|
| Q |
107 |
gg |
108 |
Q |
| |
|
|| |
|
|
| T |
8748766 |
gg |
8748767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 32830186 - 32830085
Alignment:
| Q |
7 |
agaaaccgcttgtgtgcaaagttgttggtaggacctagggctaatgttagtgtttgaatttgcttgactttcgtaagaaatttggttatggatcttgtgg |
106 |
Q |
| |
|
||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32830186 |
agaaaccacttctgtgcaaggttgttgctaggacctagggctaatgttagtgtttgaatttgcttgactttcgtaagaaatttggttatggatcttgtgg |
32830087 |
T |
|
| Q |
107 |
gg |
108 |
Q |
| |
|
|| |
|
|
| T |
32830086 |
gg |
32830085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 35081224 - 35081319
Alignment:
| Q |
13 |
cgcttgtgtgcaaagttgttggtaggacctagggctaatgttagtgtttgaatttgcttgactttcgtaagaaatttggttatggatcttgtgggg |
108 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35081224 |
cgcttgtgtgcaaggttgttgctaggacctagggctaatgttagtgtttgaatttgcttgactttcgtaagaaatttggttatgaatcttgtgggg |
35081319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 39427828 - 39427765
Alignment:
| Q |
7 |
agaaaccgcttgtgtgcaaagttgttggtaggacctagggctaatgttagtgtttgaatttgct |
70 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39427828 |
agaaactgcttgtgtgcaaggttgttgctaggacctagggctaatgttagtgtttgaatttgct |
39427765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University