View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-31 (Length: 140)
Name: Solexa-NF5886-31
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-31 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 5e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 4641282 - 4641143
Alignment:
| Q |
1 |
ctttaatttggaagagtccgggtccatcaaaggtagtggcgttctcgtggtccttactcgttgatcgtattccgacaagagacaatcttgcgcttcgcta |
100 |
Q |
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| T |
4641282 |
ctttaatttggaagagtccgggtccatcaaaggtagtggcgttctcattgtccttactccttgatcgtattccgacgagagacaatcttgcgcttcgcca |
4641183 |
T |
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| Q |
101 |
tatcttagatccgcatgagtcccttctttgtgttatgtgt |
140 |
Q |
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| T |
4641182 |
tatcttagatccggatgcgtcccttctttgtgttatgtgt |
4641143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 36988596 - 36988735
Alignment:
| Q |
1 |
ctttaatttggaagagtccgggtccatcaaaggtagtggcgttctcgtggtccttactcgttgatcgtattccgacaagagacaatcttgcgcttcgcta |
100 |
Q |
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| T |
36988596 |
ctttaatttggaagagtccggctccatcgaaagtggtggcgttctcgtggtccttactccttgatcgaatccctacaaaagataatctcgctattcgcca |
36988695 |
T |
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| Q |
101 |
tatcttagatccgcatgagtcccttctttgtgttatgtgt |
140 |
Q |
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| T |
36988696 |
catcttaccttcggatgtgtctcccctttgtgttatgtgt |
36988735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 2921450 - 2921314
Alignment:
| Q |
4 |
taatttggaagagtccgggtccatcaaaggtagtggcgttctcgtggtccttactcgttgatcgtattccgacaagagacaatcttgcgcttcgctatat |
103 |
Q |
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| T |
2921450 |
taatttggaagagtccggctccgtctaaagtagtggccttctcttggtctttacttcttgatcgaatccccactagagttaatctcgccattcgccatat |
2921351 |
T |
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| Q |
104 |
cttagatccgcatgagtcccttctttgtgttatgtgt |
140 |
Q |
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| T |
2921350 |
cttggctccggatgagtctcctctttgtgttttgtgt |
2921314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 1033872 - 1033938
Alignment:
| Q |
7 |
tttggaagagtccgggtccatcaaaggtagtggcgttctcgtggtccttactcgttgatcgtattcc |
73 |
Q |
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| T |
1033872 |
tttggaagagtccggctccttccaaagttgtggcgttctcttggtccttgctccttgatcgtattcc |
1033938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 11272134 - 11272189
Alignment:
| Q |
36 |
gtggcgttctcgtggtccttactcgttgatcgtattccgacaagagacaatcttgc |
91 |
Q |
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| T |
11272134 |
gtggcgttctcgtggtccttactccttgatcgtattccggcgaaagataatcttgc |
11272189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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