View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-33 (Length: 139)
Name: Solexa-NF5886-33
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-33 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 6e-66; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 38038790 - 38038928
Alignment:
| Q |
1 |
agaatcgtcaccctgcaataacggttacatgattatcacagaaatatataaaacaactacgaaaagcaagtgaccaaaatgtgattttaaaattggtaag |
100 |
Q |
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| T |
38038790 |
agaatcgtcaccctgcaataacggttacatgattatcacagaaatatataaaacaactacgaaaagcaagtgagaaaaatgtgattttgaaattggtaag |
38038889 |
T |
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| Q |
101 |
taaaacataccattttttatctctcaactttgcaaagta |
139 |
Q |
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| T |
38038890 |
taaaacataccattttttatctctcaactttgcaaagta |
38038928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 7320017 - 7319968
Alignment:
| Q |
78 |
aatgtgattttaaaattggtaagtaaaacataccattttttatctctcaa |
127 |
Q |
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| T |
7320017 |
aatgtgattttgaaattggcaagaaaaacataccatttttaatctctcaa |
7319968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 7320156 - 7320087
Alignment:
| Q |
1 |
agaatcgtcaccctgcaataacggttacatgattatcacagaaatatataaaacaactacgaaaagcaag |
70 |
Q |
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| T |
7320156 |
agaatcatcaccctgcaataatttttacacagttatcacagagatatataaaacaattacaaaaagcaag |
7320087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 2718873 - 2718911
Alignment:
| Q |
32 |
attatcacagaaatatataaaacaactacgaaaagcaag |
70 |
Q |
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| T |
2718873 |
attatcacagaaatatataaaacaattacgaaaagcaag |
2718911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 2719009 - 2719058
Alignment:
| Q |
78 |
aatgtgattttaaaattggtaagtaaaacataccattttttatctctcaa |
127 |
Q |
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| T |
2719009 |
aatgtgattttgaaattggcaagaaaaacataccatttttaatctctcaa |
2719058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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