View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-36 (Length: 138)
Name: Solexa-NF5886-36
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-36 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 5e-54; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 11552330 - 11552465
Alignment:
| Q |
1 |
cagagatgatgcacaaagtaacttttatggcatttgtttaattcctaatttctactcttcaaactatagtacattgatacgtaccttttaaatttccaat |
100 |
Q |
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| T |
11552330 |
cagagatgatgcacagagtaactt--atggcatttgttcaattcctaacttctactcttcaaactatagtacattgatacgtaccttttaaatttccaat |
11552427 |
T |
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| Q |
101 |
ttctgcatttatattgcatattggacattcttataaac |
138 |
Q |
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| T |
11552428 |
ttctgcatttatattgcctattgtacattcttataaac |
11552465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 11547568 - 11547681
Alignment:
| Q |
1 |
cagagatgatgcacaaagtaacttttatggcatttgtttaattcctaatttctactctt-caaactatagtacattgatacgtaccttttaaatttccaa |
99 |
Q |
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| T |
11547568 |
cagagatgatgcacaaattaactg--aaggcatttgttaaattcctaacttctactctttcaaactatagtacattgatacataccttctaaatttccaa |
11547665 |
T |
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| Q |
100 |
tttctgcatttatatt |
115 |
Q |
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| T |
11547666 |
tttctgcatttatatt |
11547681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 18098269 - 18098191
Alignment:
| Q |
60 |
caaactatagtacattgatacgtaccttttaaatttccaatttctgcatttatattgcatattggacattcttataaac |
138 |
Q |
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| T |
18098269 |
caaactatagtacattgatacctaccttctaaattttcaatttctgcattgatatttcctattagacagtattataaac |
18098191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 18107791 - 18107729
Alignment:
| Q |
60 |
caaactatagtacattgatacgtaccttttaaatttccaatttctgcatttatattgcatatt |
122 |
Q |
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| T |
18107791 |
caaactatagtacatccatacctaccttctaaattttcaatttctgcatttatatttcatatt |
18107729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 18138191 - 18138246
Alignment:
| Q |
60 |
caaactatagtacattgatacgtaccttttaaatttccaatttctgcatttatatt |
115 |
Q |
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| T |
18138191 |
caaactatagtacattcatacctaccttctgaaatttcaatttctgcatttatatt |
18138246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 18082969 - 18082919
Alignment:
| Q |
65 |
tatagtacattgatacgtaccttttaaatttccaatttctgcatttatatt |
115 |
Q |
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| T |
18082969 |
tatagcacattgatacctaccttctaaattttcaatttctgcattgatatt |
18082919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 12648771 - 12648711
Alignment:
| Q |
64 |
ctatagtacattgatacgtacctt--ttaaatttccaatttctgcatttatattgcatatt |
122 |
Q |
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| T |
12648771 |
ctatagaacattgatacataccttatttacctttccaatttctgcatttatattgcctatt |
12648711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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