View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-39 (Length: 134)
Name: Solexa-NF5886-39
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-39 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 1e-60; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 12075182 - 12075049
Alignment:
| Q |
1 |
catagggtgaaattgtgagtcgacattagttttggaggaagaaacggtgaacttagcttaatttgtgaccacacgaaaaagcttattacttatccaaaac |
100 |
Q |
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| T |
12075182 |
catagggtgaaattgtgagtcgacattagttttggaggaagaaacggtgaacttagcttaatttgtgaccacacgaaaaagcttattacttatccaaaac |
12075083 |
T |
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| Q |
101 |
tttcaattaatctttattcaccaaaccatgtatg |
134 |
Q |
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| T |
12075082 |
tttcaattcaactttctttaccaaaccatgtatg |
12075049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 12076509 - 12076406
Alignment:
| Q |
1 |
catagggtgaaattgtgagtcgacattagttttggaggaagaaacggtgaacttagcttaatttgtgaccacacgaaaaagcttattacttatccaaaac |
100 |
Q |
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| T |
12076509 |
catagggtgaaactttgagtcgacattagttttggaggaaagaacggtgaacttagcttaatttgtggccacacgaagaagctgattacttatcgaaaac |
12076410 |
T |
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| Q |
101 |
tttc |
104 |
Q |
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|||| |
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| T |
12076409 |
tttc |
12076406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 12054620 - 12054544
Alignment:
| Q |
27 |
tagttttggaggaagaaacggtgaacttagcttaatttgtgaccacacgaaaaagcttattacttatccaaaactttc |
104 |
Q |
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| T |
12054620 |
tagttttggaagaa-aaacggtgaacttagcttgatttgtgaccacacgaagaagctgattacttatcgaaaactttc |
12054544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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