View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-40 (Length: 133)
Name: Solexa-NF5886-40
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-40 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 38264880 - 38264755
Alignment:
| Q |
8 |
aaaagggagagtcagatggcagcacgagtgcagtagtcattggcgcaaaccaaacatgtcatataaccaaaacctgacctgcatctattcacacacacaa |
107 |
Q |
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| T |
38264880 |
aaaagggagagtcagatggcagcacgagtgcagtagtcattggcgcaaaccaaacatgtcatataaccaaaacctgacctgcatctatccacacacacaa |
38264781 |
T |
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| Q |
108 |
tcctacgatcccaccggaaaatcacg |
133 |
Q |
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| T |
38264780 |
tcctacgatcccactggaaaatcacg |
38264755 |
T |
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