View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-41 (Length: 133)
Name: Solexa-NF5886-41
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-41 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 32783733 - 32783601
Alignment:
| Q |
1 |
cagagacagtgaaatttggaatttacctcaaaaagaagatgacattttgcctgctatcaaattaagttatgatcagttaccttcttatttaaaacgatgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32783733 |
cagagacagtgaaatttggaatttacctcaaaaagaagatgacattttgcctgctatcaaattaagttacgatcagttaccttcttatttaaaacgatgt |
32783634 |
T |
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| Q |
101 |
tttgcttgcttctctctctttcaaaaggacttt |
133 |
Q |
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| T |
32783633 |
tttacttgcttctccctctttcaaaaggacttt |
32783601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 7e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 7e-53
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 49352536 - 49352668
Alignment:
| Q |
1 |
cagagacagtgaaatttggaatttacctcaaaaagaagatgacattttgcctgctatcaaattaagttatgatcagttaccttcttatttaaaacgatgt |
100 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49352536 |
cagagacagtgagatttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgt |
49352635 |
T |
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| Q |
101 |
tttgcttgcttctctctctttcaaaaggacttt |
133 |
Q |
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| T |
49352636 |
tttgcttgcttctctctctttgaaaagaacttt |
49352668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 49341164 - 49341290
Alignment:
| Q |
5 |
gacagtgaaatttggaatttacctcaaaaagaagatgacattttgcctgctatcaaattaagttatgatcagttaccttcttatttaaaacgatgttttg |
104 |
Q |
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| T |
49341164 |
gacagtgaaatttgggatttaccacaaaaagatgacgacattttgtctgctatcaaa--aagttatgatcagttaccttcttatttaaaacaatgttttg |
49341261 |
T |
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| Q |
105 |
cttgcttctctctctttcaaaaggacttt |
133 |
Q |
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| T |
49341262 |
cttgcttctctctctttgaaaagtacttt |
49341290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 6e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 29602362 - 29602247
Alignment:
| Q |
5 |
gacagtgaaatttggaatttacctcaaaaagaagatgacattttgcctgctatcaaattaagttatgatcagttaccttcttatttaaaacgatgttttg |
104 |
Q |
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|||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| |
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| T |
29602362 |
gacaatgagatttggaatttaccacaaaaagaagatgatattttgcctgctatcaaattaagttttgatcaattaccatcttatttaaaacgatgttttg |
29602263 |
T |
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| Q |
105 |
cttgcttctctctctt |
120 |
Q |
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| T |
29602262 |
cctgcttctccctctt |
29602247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 29743899 - 29744015
Alignment:
| Q |
5 |
gacagtgaaatttggaatttacctcaaaaagaagatgacattttgcctgctatcaaattaagttatgatcagttaccttcttatttaaaacgatgttttg |
104 |
Q |
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|||| ||| |||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||| |
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| T |
29743899 |
gacaatgagatttggaatttaccacaaaaaaaagatgatattttgcctgctatcaaattaagttttgatcaattaccgtcttatttgaaacgatgttttg |
29743998 |
T |
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| Q |
105 |
cttgcttctctctcttt |
121 |
Q |
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| T |
29743999 |
cctgcttctccctcttt |
29744015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 29750932 - 29751048
Alignment:
| Q |
5 |
gacagtgaaatttggaatttacctcaaaaagaagatgacattttgcctgctatcaaattaagttatgatcagttaccttcttatttaaaacgatgttttg |
104 |
Q |
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|||| ||| |||||||||||||| |||||||||||||| |||||||||||| |||||||||||| |||||| ||||| || ||||||||||||||||||| |
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| T |
29750932 |
gacaatgagatttggaatttaccacaaaaagaagatgatattttgcctgctctcaaattaagttttgatcaattaccctcatatttaaaacgatgttttg |
29751031 |
T |
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| Q |
105 |
cttgcttctctctcttt |
121 |
Q |
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| T |
29751032 |
cctgcttctccctcttt |
29751048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 4e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 35158050 - 35158177
Alignment:
| Q |
5 |
gacagtgaaatttggaatttacctcaaaaagaagatgacattttgcctgctatcaaattaagttatgatcagttaccttcttatttaaaacgatgttttg |
104 |
Q |
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|||| ||| |||||||||||||| |||||||| || |||||||| || || |||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
35158050 |
gacaatgagatttggaatttaccgcaaaaagacgaggacattttaccagcaatcaaattaagttatgatcaattaccttcttatttaaaacagtgttttg |
35158149 |
T |
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| Q |
105 |
cttgcttctctctctttcaaaaggactt |
132 |
Q |
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|||||||||| |||||| |||| ||||| |
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| T |
35158150 |
cttgcttctccctctttgaaaaagactt |
35158177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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