View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-42 (Length: 132)
Name: Solexa-NF5886-42
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-42 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 6e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 52559296 - 52559165
Alignment:
| Q |
1 |
cacagaccagcacagcaacaactgagaggtcgttgttggaaatgaatttctggctgctccatgcagttctctcagtcaagagcttggagcaggccccgca |
100 |
Q |
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| T |
52559296 |
cacagaccagcacagcaacaactgagaggtcgttgttggaaatgaatttctggctgctccatgcagttctctcagtcaagagcttggagcaggccccgca |
52559197 |
T |
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| Q |
101 |
agattgtaaatccatggtgggagaatacgaga |
132 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
52559196 |
agattgtaaatccatggtgggagaatacgaga |
52559165 |
T |
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