View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-44 (Length: 130)
Name: Solexa-NF5886-44
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-44 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 3e-46; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 7721337 - 7721458
Alignment:
| Q |
8 |
ggaacttgccaggaagaatccaatttaaagccaaaagagacatgacggatttgtttgtcaatatgctgcccctttttattaactaaaagatagtcatttc |
107 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7721337 |
ggaacttgccaggaagaatccaattcaaagccaaaagagacatgacggggttgtttatcaatatgctgcccctttttattaactaaaagatagtcatttc |
7721436 |
T |
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| Q |
108 |
ttgaaacagaacttgcgagatc |
129 |
Q |
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|||||| | ||||||| ||||| |
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| T |
7721437 |
ttgaaataaaacttgccagatc |
7721458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 6e-44
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 7521145 - 7521024
Alignment:
| Q |
8 |
ggaacttgccaggaagaatccaatttaaagccaaaagagacatgacggatttgtttgtcaatatgctgcccctttttattaactaaaagatagtcatttc |
107 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7521145 |
ggaacttgccaggaagaatccaattgaaagccaaaagagacatgacgaggttgtttgtcaatatgctgcccctttttattaactaaaagatagtcatctc |
7521046 |
T |
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| Q |
108 |
ttgaaacagaacttgcgagatc |
129 |
Q |
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| T |
7521045 |
ttgaaacaaaagttgccagatc |
7521024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 7128059 - 7128180
Alignment:
| Q |
8 |
ggaacttgccaggaagaatccaatttaaagccaaaagagacatgacggatttgtttgtcaatatgctgcccctttttattaactaaaagatagtcatttc |
107 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| |||||||| |||| ||||||||||||||||||||||||||| || |
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| T |
7128059 |
ggaacttgccaggaagaatccaatataaagccaaaagagacatggcgggtttgttcgtcaatattctgctcctttttattaactaaaagatagtcatctc |
7128158 |
T |
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| Q |
108 |
ttgaaacagaacttgcgagatc |
129 |
Q |
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|||||||| || |||| ||||| |
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| T |
7128159 |
ttgaaacaaaagttgccagatc |
7128180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 7483076 - 7482971
Alignment:
| Q |
8 |
ggaacttgccaggaagaatccaatttaaagccaaaagagacatgacggatttgtttgtcaatatgctgcccctttttattaactaaaagatagtcatttc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
7483076 |
ggaacttgccaggaagaatccaatttaaagccaaaagagacatgacgaggttgtttatcaatatgctgcccctttttattaactaaaagacaatcatttc |
7482977 |
T |
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| Q |
108 |
ttgaaa |
113 |
Q |
| |
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|||||| |
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| T |
7482976 |
ttgaaa |
7482971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 7495471 - 7495354
Alignment:
| Q |
12 |
cttgccaggaagaatccaatttaaagccaaaagagacatgacggatttgtttgtcaatatgctgcccctttttattaactaaaagatagtcatttcttga |
111 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
7495471 |
cttgccaggaagaatccaattcaaagccaaaagagacatgacgaggttgtctgtcaatatgttgccccttttctttaactaaaagatagtcatttcttga |
7495372 |
T |
|
| Q |
112 |
aacagaacttgcgagatc |
129 |
Q |
| |
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|| | ||||||| ||||| |
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| T |
7495371 |
aataaaacttgccagatc |
7495354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 7717505 - 7717610
Alignment:
| Q |
8 |
ggaacttgccaggaagaatccaatttaaagccaaaagagacatgacggatttgtttgtcaatatgctgcccctttttattaactaaaagatagtcatttc |
107 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7717505 |
ggaacttgccaggaatgattcaattgaaagccaaaagagacatgatgaggttgtttgtcaatatgctgcccctttttattaactaaaagatagtcatttc |
7717604 |
T |
|
| Q |
108 |
ttgaaa |
113 |
Q |
| |
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|||||| |
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|
| T |
7717605 |
ttgaaa |
7717610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 7529192 - 7529087
Alignment:
| Q |
8 |
ggaacttgccaggaagaatccaatttaaagccaaaagagacatgacggatttgtttgtcaatatgctgcccctttttattaactaaaagatagtcatttc |
107 |
Q |
| |
|
||||||||||||||| || ||||| ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
7529192 |
ggaacttgccaggaatgattcaattgaaaaccaaaagagacatgacgaggttgtttatcaatatgctgcccctttttattaactaaaagacaatcatttc |
7529093 |
T |
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| Q |
108 |
ttgaaa |
113 |
Q |
| |
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|||||| |
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| T |
7529092 |
ttgaaa |
7529087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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