View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5886-49 (Length: 127)

Name: Solexa-NF5886-49
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5886-49
Solexa-NF5886-49
[»] chr1 (9 HSPs)
chr1 (8-127)||(43043062-43043181)
chr1 (8-97)||(46887245-46887334)
chr1 (8-96)||(46889266-46889354)
chr1 (14-97)||(30786668-30786751)
chr1 (8-95)||(26049269-26049356)
chr1 (12-96)||(36729371-36729455)
chr1 (8-97)||(26051366-26051455)
chr1 (13-97)||(20063191-20063274)
chr1 (8-51)||(20060132-20060175)
[»] chr5 (6 HSPs)
chr5 (8-97)||(20506712-20506801)
chr5 (18-96)||(21946750-21946828)
chr5 (8-96)||(31813140-31813228)
chr5 (10-89)||(7015071-7015150)
chr5 (11-79)||(10735363-10735431)
chr5 (8-96)||(33270738-33270825)
[»] chr3 (6 HSPs)
chr3 (12-94)||(39944908-39944990)
chr3 (8-82)||(43543783-43543857)
chr3 (8-51)||(1257680-1257723)
chr3 (8-77)||(49021435-49021504)
chr3 (13-88)||(49237478-49237552)
chr3 (10-96)||(25484838-25484923)
[»] chr7 (2 HSPs)
chr7 (8-96)||(4588263-4588351)
chr7 (8-86)||(218402-218480)
[»] chr4 (10 HSPs)
chr4 (8-96)||(54349598-54349686)
chr4 (11-97)||(55440910-55440996)
chr4 (8-94)||(5555577-5555663)
chr4 (8-97)||(46611981-46612070)
chr4 (8-96)||(39162792-39162880)
chr4 (8-95)||(53019586-53019673)
chr4 (8-96)||(12571519-12571607)
chr4 (8-94)||(35801756-35801842)
chr4 (11-89)||(4947675-4947753)
chr4 (10-89)||(24778227-24778306)
[»] chr2 (7 HSPs)
chr2 (8-96)||(11105487-11105575)
chr2 (8-96)||(27614306-27614394)
chr2 (8-94)||(19259339-19259425)
chr2 (8-97)||(36558535-36558621)
chr2 (8-96)||(24574413-24574501)
chr2 (8-97)||(10376998-10377087)
chr2 (8-96)||(10374456-10374544)
[»] scaffold0316 (1 HSPs)
scaffold0316 (11-96)||(11318-11403)
[»] chr8 (7 HSPs)
chr8 (8-97)||(12230918-12231007)
chr8 (10-89)||(24800350-24800429)
chr8 (8-96)||(33327513-33327601)
chr8 (18-96)||(31518138-31518216)
chr8 (8-96)||(33545555-33545643)
chr8 (8-85)||(24801337-24801413)
chr8 (8-47)||(375405-375444)
[»] scaffold0007 (1 HSPs)
scaffold0007 (10-97)||(197679-197764)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 7e-50; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 43043181 - 43043062
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaacagcaatattgtt 107  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  43043181 tgcactttgcagtgtgttgaaataacccatctgccttgtcgaaaacataatcatgagttccaccaaatatttcatttttggtgttaacagcaatattgtt 43043082  T
Q  108 gcctagaatgtcaggagcat 127  Q
    ||||||||||||||||||||    
T  43043081 gcctagaatgtcaggagcat 43043062  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 46887245 - 46887334
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaacag 97  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  46887245 tgcactttgcaacatgtcgaaataactcatctgccttgtcgaaaacataatcattagttcgaccaaatatttcatttttggtgttaacag 46887334  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 46889266 - 46889354
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||    
T  46889266 tgcactttgaaacatgtcgaaataactcatctgccttgtcgaaaacataatcattagttcaaccaaatatttcatttttggtgttaaca 46889354  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 30786668 - 30786751
Alignment:
Q  14 ttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaacag 97  Q
    ||||| ||||| |||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  30786668 ttgcaacatgtcgaaataacccatctgccttgtcgaaaatataatcataagttcgactaaatatttcatttttggtgttaacag 30786751  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 26049356 - 26049269
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaac 95  Q
    ||||||||||||||||| ||||||||||||||  ||| ||||||| |||||||||| |||||| |||||||| ||||||||| |||||    
T  26049356 tgcactttgcagcatgtcgaaataactcatctaacttatcgaaaatataatcatgatttcgaccaaatattttatttttggtattaac 26049269  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 36729455 - 36729371
Alignment:
Q  12 ctttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||||||||| |||||||| |||||  ||| ||||||| |||||||||| |||||| |||||||| ||||||||| ||||||    
T  36729455 ctttgcagcatgtagaaataacccatctaacttatcgaaaatataatcatgatttcgaccaaatattttatttttggtattaaca 36729371  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 26051455 - 26051366
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaacag 97  Q
    |||||||||||  |||| |||| |||||||||  ||||||||||| |||||||||| |||||| |||||||| |||||| || |||||||    
T  26051455 tgcactttgcaatatgtcgaaaaaactcatctaacttgtcgaaaatataatcatgatttcgacaaaatattttattttttgtattaacag 26051366  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 20063191 - 20063274
Alignment:
Q  13 tttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaacag 97  Q
    |||||||||||| ||||||||  ||||| ||||||| ||| |||||||||| |||||| |||||||  ||||||||| |||||||    
T  20063191 tttgcagcatgtcgaaataacctatctgacttgtcg-aaatataatcatgacttcgaccaaatattatatttttggtattaacag 20063274  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 20060132 - 20060175
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaa 51  Q
    ||||||||||||||||| |||||||||||| || ||||||||||    
T  20060132 tgcactttgcagcatgtcgaaataactcatatggcttgtcgaaa 20060175  T

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Target: chr5 (Bit Score: 74; Significance: 2e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 20506801 - 20506712
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaacag 97  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  20506801 tgcactttgcagcatgtcgaaataacacatctgccttgtcgaaaacataatcattagttcgaccaaatatttcatttttggtgttaacag 20506712  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 21946828 - 21946750
Alignment:
Q  18 agcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||| |||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21946828 agcatgtcgaaataacccatctgccttatcgaaaacataatcatgagttcgaccaaatatttcatttttggtgttaaca 21946750  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 31813228 - 31813140
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||||||| ||||| |||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  31813228 tgcactttgcaacatgtcgaaataacccatttgccttgtcgaaaacataatcgtgagttcgaccaaatatttcatttttgatgttaaca 31813140  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 7015071 - 7015150
Alignment:
Q  10 cactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggt 89  Q
    ||||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||| ||||| ||| ||||||||    
T  7015071 cactttgcagcatgtcgaaataacccatctgccttgtcgaaaatataatcatgaattcgaccaaataattcctttttggt 7015150  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 10735363 - 10735431
Alignment:
Q  11 actttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatattt 79  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||| || ||||||||    
T  10735363 actttgcagcatgttgaaataactcatctgccttgtcaaaaatataatcatgatttcaaccaaatattt 10735431  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 33270825 - 33270738
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||||| ||||||| |||| ||| ||| || ||||||||||  ||||||||||||||||| || ||||| ||||||||| ||||||    
T  33270825 tgcactttggagcatgtcgaaagaacccatatggcttgtcgaaat-ataatcatgagttcgaccaagtattttatttttggtattaaca 33270738  T

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Target: chr3 (Bit Score: 71; Significance: 1e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 39944908 - 39944990
Alignment:
Q  12 ctttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaa 94  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39944908 ctttgcagcatgtcgaaataacccatctgccttgtcgaaaacataatcatgagttcgaccaaatatttcatttttggtgttaa 39944990  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 43543783 - 43543857
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcat 82  Q
    ||||||||||||| ||| ||||||||||||||||||||||||  | | ||||| ||||||||| |||||||||||    
T  43543783 tgcactttgcagcctgtcgaaataactcatctgccttgtcgacgatagaatcaggagttcgaccaaatatttcat 43543857  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 1257723 - 1257680
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaa 51  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  1257723 tgcactttgcagcatgttgaaataactcatttgacttgtcgaaa 1257680  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 49021435 - 49021504
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatat 77  Q
    ||||||||||||| ||| |||| |||  ||||||||| || ||||||||||||| |||||||| ||||||    
T  49021435 tgcactttgcagcctgtcgaaaaaacatatctgccttatcaaaaacataatcattagttcgaccaaatat 49021504  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 49237552 - 49237478
Alignment:
Q  13 tttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttgg 88  Q
    |||||||||||| |||||||||||||| |||| || | || |||||||||| ||||||  ||||||| ||||||||    
T  49237552 tttgcagcatgtcgaaataactcatctaccttatcaagaatataatcatgatttcgaccgaatattt-atttttgg 49237478  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 25484838 - 25484923
Alignment:
Q  10 cactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||||||||||| ||||||||  ||| | ||| |||||| ||||||||||| |||||| |||||||  |||||| || ||||||    
T  25484838 cactttgcagcatgtcgaaataacctatcagacttatcgaaa-cataatcatgatttcgaccaaatattatattttttgtattaaca 25484923  T

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Target: chr7 (Bit Score: 69; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 4588351 - 4588263
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  4588351 tgcactttgcaacatgtcgaaataacccatctgccttgtcgaaaatataatcatgagttcgaccaaatatttcatttttggtgttaaca 4588263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 218480 - 218402
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcattttt 86  Q
    ||||||||||| ||||| |||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  218480 tgcactttgcaacatgtcgaaataacccatctgccttgttgaaaacataatcatgagttcgaccaaatatttcattttt 218402  T

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Target: chr4 (Bit Score: 69; Significance: 2e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 54349598 - 54349686
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  54349598 tgcactttgcaacatgtcgaaataacccatctgccttgtcgaaaatataatcatgagttcgaccaaatatttcatttttggtgttaaca 54349686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 55440996 - 55440910
Alignment:
Q  11 actttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaacag 97  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  55440996 actttgcagcatgtcgaaataatccatctgccttgtcgaaaacataatcgtgagttcgaccaaatatttcatttttggtgttaacag 55440910  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 5555663 - 5555577
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaa 94  Q
    |||| ||| |||||||| |||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  5555663 tgcattttacagcatgtcgaaataacacatctgccttgtcgaaaacataatcattagttcgaccaaatatttcatttttggtgttaa 5555577  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 46611981 - 46612070
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaacag 97  Q
    ||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  46611981 tgcactttgtagcctgtcgaaataactcatctgccttatcgaaaacataatcataagttcgaccaaatatttcatttttagtgttaacag 46612070  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 39162880 - 39162792
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||||||| ||||| ||||||||  ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||    
T  39162880 tgcactttgcaacatgtcgaaataaccaatctgccttgtcgaaaatataatcatgagttcgacaaaatatttcatttttggtgctaaca 39162792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 53019673 - 53019586
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaac 95  Q
    ||||||||||| ||||| |||||||| ||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  53019673 tgcactttgcaacatgtcgaaataacccatttgccttgtcgaaaatagaatcatgagttcgaccaaatatttcatttttggtgttaac 53019586  T

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Target: chr4; HSP #7
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 12571519 - 12571607
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||||||||  ||||||||    
T  12571519 tgcactttgcagcatgtcgaaataacccatctaccttgtcgaaaatagaatcatgagttcgaccaaatatttcattttttatgttaaca 12571607  T

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Target: chr4; HSP #8
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 35801842 - 35801756
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaa 94  Q
    ||||||||||| ||||| |||||||| ||||| |||||||||||| |||||| |||||||||  |||||||||||||||||||||||    
T  35801842 tgcactttgcaacatgtcgaaataacccatctaccttgtcgaaaatataatcgtgagttcgatcaaatatttcatttttggtgttaa 35801756  T

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Target: chr4; HSP #9
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 4947675 - 4947753
Alignment:
Q  11 actttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggt 89  Q
    |||| |||||||||  |||||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||||    
T  4947675 acttcgcagcatgtcaaaataactcatctgtcttgtcaaaaatataattatgagttcgacaaaatatttcatttttggt 4947753  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 24778227 - 24778306
Alignment:
Q  10 cactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggt 89  Q
    ||||||||||||||| |||| || |||||||| ||||| |||  |||||||| | |||||| ||||||||||||||||||    
T  24778227 cactttgcagcatgtcgaaaaaaatcatctgcgttgtctaaattataatcataatttcgaccaaatatttcatttttggt 24778306  T

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Target: chr2 (Bit Score: 65; Significance: 5e-29; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 11105487 - 11105575
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| || ||||||    
T  11105487 tgcactttgcagcatgtcgaaataactcatctgccttgtcgaaaagataatcatgatttcgaccaaatatttcattttttgtattaaca 11105575  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 27614306 - 27614394
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    |||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  27614306 tgcactttacagcctgtcgaaataacccatctgccttgtcgaaaacataatcatgagttcgaccaaatattttatttttggtgttaaca 27614394  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 19259339 - 19259425
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaa 94  Q
    |||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||    
T  19259339 tgcactttgcggcatgtcgaaataacccatctgccttgtcgaaaacataatcatgagttcgatcaaatattacatttttggtgttaa 19259425  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 36558621 - 36558535
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaacag 97  Q
    ||||||||||| ||||||||||||||  ||||||||||||||   |||||||||||||||||| ||||||||||| ||||||||||||||    
T  36558621 tgcactttgcaacatgttgaaataaccaatctgccttgtcga---cataatcatgagttcgaccaaatatttcatgtttggtgttaacag 36558535  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 24574413 - 24574501
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||||| ||| | | |||||||| ||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||    
T  24574413 tgcactttgtagcctatcgaaataacacatatgccttgtcgaaaacataatcattagttcgaccaaatattttatttttggtgttaaca 24574501  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 10377087 - 10376998
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaacag 97  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||  | | |||||||| |||||| ||||||||||||||||||||| ||||    
T  10377087 tgcactttgcagcctgtcgaaataactcatctgccttatcgacgatagaatcatgaattcgaccaaatatttcatttttggtgttcacag 10376998  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 10374544 - 10374456
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||||||||| ||| |||||||| ||| |||||| ||||  | | |||||||| |||||| |||||||||||||||||||||||||    
T  10374544 tgcactttgcagcctgtcgaaataacccatttgccttatcgacgatagaatcatgaattcgaccaaatatttcatttttggtgttaaca 10374456  T

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Target: scaffold0316 (Bit Score: 62; Significance: 3e-27; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 11318 - 11403
Alignment:
Q  11 actttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    |||||||||||||| |||||||  ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||    
T  11318 actttgcagcatgtcgaaataatccatctgccttgtcaaaaacataatcgtgagttcgaccaaatatttcatttttggtgttaaca 11403  T

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Target: chr8 (Bit Score: 58; Significance: 8e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 12231007 - 12230918
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaacag 97  Q
    ||||||||||||||||| |||||||| |||||||||||||||||| | ||| ||||||||||| |||||||| |||||| ||||||||||    
T  12231007 tgcactttgcagcatgtcgaaataacacatctgccttgtcgaaaatagaattatgagttcgaccaaatattttattttttgtgttaacag 12230918  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 24800429 - 24800350
Alignment:
Q  10 cactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggt 89  Q
    ||||||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||| |||||||| |||| ||||    
T  24800429 cactttgcagcatgtcgaaataacccatttgccttgtcgaaaatataatcatgagttcgaccaaatattttatttgtggt 24800350  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 33327601 - 33327513
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||||||||||||| ||||||||  || | |||||| ||||| | ||||||||||||||| ||||||||||||||| |||||||||    
T  33327601 tgcactttgcagcatgtcgaaataacctatttaccttgttgaaaatagaatcatgagttcgaccaaatatttcattttttgtgttaaca 33327513  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 31518216 - 31518138
Alignment:
Q  18 agcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||| |||||||| |||||||||||||||||| | |||||| |||||||  ||||||||||||||| |||||||||    
T  31518216 agcatgtcgaaataacccatctgccttgtcgaaaatagaatcataagttcgataaaatatttcattttttgtgttaaca 31518138  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 33545643 - 33545555
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaaca 96  Q
    ||||||||||||||||| ||||||||  || || |||||||||| | | ||||||| |||||| |||||| | ||||||||| ||||||    
T  33545643 tgcactttgcagcatgtcgaaataacatatatggcttgtcgaaatcttgatcatgatttcgaccaaatatcttatttttggtattaaca 33545555  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 24801413 - 24801337
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttt 85  Q
    ||||||||||  ||||| |||||||| |||||||||| ||||||  ||||||||| ||| ||| ||||||||||||||    
T  24801413 tgcactttgcttcatgtcgaaataacacatctgccttatcgaaat-ataatcatgggttagaccaaatatttcatttt 24801337  T

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Target: chr8; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 375444 - 375405
Alignment:
Q  8 tgcactttgcagcatgttgaaataactcatctgccttgtc 47  Q
    ||||||||||||||||| |||||||||| |||| ||||||    
T  375444 tgcactttgcagcatgtcgaaataactcttctgacttgtc 375405  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 197764 - 197679
Alignment:
Q  10 cactttgcagcatgttgaaataactcatctgccttgtcgaaaacataatcatgagttcgactaaatatttcatttttggtgttaacag 97  Q
    ||||||||||||||| |||| ||| ||||||  |||||| ||| |||||||||| |||||| |||||||| ||||||||| |||||||    
T  197764 cactttgcagcatgtcgaaagaacccatctg-gttgtcg-aaatataatcatgacttcgaccaaatattttatttttggtattaacag 197679  T

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