View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5886-5 (Length: 233)
Name: Solexa-NF5886-5
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 11848184 - 11848408
Alignment:
| Q |
7 |
atttaggacaactcaatattcaaggttctttaccaaaagaattaatgcaactcactgctttaactcgtttcgattgcagtgaaaatgagttttctggagg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11848184 |
atttaggacaactcaatattcaaggttctttaccaaaagaattaatgcaactcactgctttaactcgtttcgattgcagtgaaaatgagttttctggagg |
11848283 |
T |
|
| Q |
107 |
ttttccatacatgccaaattcacttcagaacttgtatatcagaaacaacagtttcacttccatgcctagtgatttcttcaccaacatgagtaatttgata |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11848284 |
ttttccatacatgccaaattcacttcagaacttgtatatcagaaacaacagtttcacttccatgcctagtgatttcttcaccaacatgagtaatttgata |
11848383 |
T |
|
| Q |
207 |
gaggtggtaattgattctaaccctt |
231 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11848384 |
gaggtggtaattgattctaaccctt |
11848408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 11858952 - 11858761
Alignment:
| Q |
21 |
aatattcaaggttctttaccaaaagaattaatgcaactcactgctttaactcgtttcgattgcagtgaaaatgagttttctggaggttttccatacatgc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||| |||||| || |||| || ||| | || ||||| | |||||| ||||||| |
|
|
| T |
11858952 |
aatattcaaggttctttaccaaaagaattggtgcaactcactcagttaaatcgttttgagtgcaatggaaacgctttatctggtgattttccttacatgc |
11858853 |
T |
|
| Q |
121 |
caaattcacttcagaacttgtatatcagaaacaacagtttcacttccatgcctagtgatttcttcaccaacatgagtaatttgatagaggtg |
212 |
Q |
| |
|
||| |||||||||| |||||||| | ||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11858852 |
caagttcacttcagtttttgtatattaacaacaacaatttcacttccatgccaagtgatttcttcacaaacatgagtaatttgatagaggtg |
11858761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 11834815 - 11834996
Alignment:
| Q |
24 |
attcaaggttctttaccaaaagaattaatgcaactcactgctttaactcgtttcgattgcagtgaaaatgagttt-tctggaggttttccatacatgcca |
122 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||| || || |||| || ||| ||||| ||||| | |||||| ||||||||| |
|
|
| T |
11834815 |
attcaaggttctttaccaaaagaattgatgcaactcactgagttaactcggtttgaatgcaatggaaac-agtttatctggtgattttccttacatgcca |
11834913 |
T |
|
| Q |
123 |
aattcacttcagaacttgtatatcagaaacaacagtttcacttccatgcctagtgatttcttcaccaacatgagtaatttgat |
205 |
Q |
| |
|
| |||||||||| | |||| ||| | ||||||| |||| |||| ||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
11834914 |
atttcacttcagcatttgtctattggtaacaacaatttcgcttcgatgccgagtgatttcttcgccaacatgagtaatttgat |
11834996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University