View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5886-50 (Length: 127)

Name: Solexa-NF5886-50
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5886-50
Solexa-NF5886-50
[»] chr2 (4 HSPs)
chr2 (9-127)||(12074414-12074531)
chr2 (8-127)||(12075818-12075936)
chr2 (78-127)||(12062760-12062809)
chr2 (78-127)||(12054015-12054065)
[»] scaffold0003 (1 HSPs)
scaffold0003 (92-127)||(20951-20986)
[»] chr7 (1 HSPs)
chr7 (92-127)||(16430969-16431004)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 1e-51; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 12074414 - 12074531
Alignment:
Q  9 ctgaaactactaacttctccgacttatcatttgattggtagtggagttccagtggtgagttcccttgagtagtagcattgacagtttaaaaagttcaatt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  12074414 ctgaaactactaacttctccgacttatcatttgattggtagtggagttccagtggtgagtt-tcttgagtagtagcattcacagtttaaaaagttcaatt 12074512  T
Q  109 ttattttagaaatcacaac 127  Q
    |||||||||||||||||||    
T  12074513 ttattttagaaatcacaac 12074531  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 12075818 - 12075936
Alignment:
Q  8 gctgaaactactaacttctccgacttatcatttgattggtagtggagttccagtggtgagttcccttgagtagtagcattgacagtttaaaaagttcaat 107  Q
    ||||||| ||| |||||||| |||||||||||||||||||| || |||||| | ||||      |||||| |||||||||||||||||||||||||||||    
T  12075818 gctgaaattaccaacttctctgacttatcatttgattggtaatgtagttccggaggtgttggtgcttgagcagtagcattgacagtttaaaaagttcaat 12075917  T
Q  108 tttattttagaaatcacaac 127  Q
    ||| |||||||  |||||||    
T  12075918 ttt-ttttagacgtcacaac 12075936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 12062760 - 12062809
Alignment:
Q  78 tagtagcattgacagtttaaaaagttcaattttattttagaaatcacaac 127  Q
    |||||||||||||||||||||| |||||||||| |||| |||||||||||    
T  12062760 tagtagcattgacagtttaaaatgttcaattttttttttgaaatcacaac 12062809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 12054015 - 12054065
Alignment:
Q  78 tagtagcattgacagtttaaaaagttcaa-ttttattttagaaatcacaac 127  Q
    ||||||||||||||| ||||||||||||| |||| ||||||||||||||||    
T  12054015 tagtagcattgacaggttaaaaagttcaattttttttttagaaatcacaac 12054065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 20951 - 20986
Alignment:
Q  92 gtttaaaaagttcaattttattttagaaatcacaac 127  Q
    |||||||||||||||| || ||||||||||||||||    
T  20951 gtttaaaaagttcaatctttttttagaaatcacaac 20986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 16430969 - 16431004
Alignment:
Q  92 gtttaaaaagttcaattttattttagaaatcacaac 127  Q
    |||||||||||||||| || ||||||||||||||||    
T  16430969 gtttaaaaagttcaatctttttttagaaatcacaac 16431004  T

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