View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-51 (Length: 127)
Name: Solexa-NF5886-51
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-51 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 161752 - 161635
Alignment:
| Q |
2 |
gcagagacactatagtatataccagtgggatttcgaactctaaattacccacttattcactttaagggtgaatcttaacaactatacttagaccaaaata |
101 |
Q |
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| T |
161752 |
gcagagacactatagtatataccagtgggatttcgaactctaaattacccacttattcactttaagggtgaatcttaacaactatacttagaccaaaata |
161653 |
T |
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| Q |
102 |
aataaatacacataacac |
119 |
Q |
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| T |
161652 |
aataaatacacataacac |
161635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 33687468 - 33687504
Alignment:
| Q |
33 |
ttcgaactctaaattacccacttattcactttaaggg |
69 |
Q |
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| T |
33687468 |
ttcgaactctaaattccccacttattcaccttaaggg |
33687504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 33704474 - 33704510
Alignment:
| Q |
33 |
ttcgaactctaaattacccacttattcactttaaggg |
69 |
Q |
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| T |
33704474 |
ttcgaactctaaattccccacttattcaccttaaggg |
33704510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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