View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-53 (Length: 124)
Name: Solexa-NF5886-53
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-53 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 7e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 32782791 - 32782908
Alignment:
| Q |
7 |
aataacatgaagtggcatagactttagattcccacaagaatgtatatacagtgacttcagattagaaagttgtattccttcaaacagcaaggtctctaga |
106 |
Q |
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| T |
32782791 |
aataacatgaagtggcatagactttagattcccacaagaatgtatatacagtgacttcagattagaaagttgtattccttcaaacagcaaggtctctaga |
32782890 |
T |
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| Q |
107 |
ttgtcacaacatttgaca |
124 |
Q |
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| T |
32782891 |
ttgtcacaatatgtgaca |
32782908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 49353478 - 49353361
Alignment:
| Q |
7 |
aataacatgaagtggcatagactttagattcccacaagaatgtatatacagtgacttcagattagaaagttgtattccttcaaacagcaaggtctctaga |
106 |
Q |
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| T |
49353478 |
aataacgtgaagtggcatagactttagatttccacaagaagaaatacccaaccactttaggttagaaagttgtatcccttcaagcaacaacgtctctaga |
49353379 |
T |
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| Q |
107 |
ttgtcacaacatttgaca |
124 |
Q |
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| T |
49353378 |
ttgtcacaagaattgaca |
49353361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 29744830 - 29744790
Alignment:
| Q |
7 |
aataacatgaagtggcatagactttagattcccacaagaat |
47 |
Q |
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| T |
29744830 |
aataacatgaagtggcaaagactttagattcctacaagaat |
29744790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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