View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5886-58 (Length: 118)

Name: Solexa-NF5886-58
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5886-58
Solexa-NF5886-58
[»] chr6 (12 HSPs)
chr6 (10-118)||(29518686-29518794)
chr6 (12-108)||(10074240-10074336)
chr6 (8-100)||(26544230-26544321)
chr6 (10-108)||(3409470-3409567)
chr6 (10-89)||(2579387-2579467)
chr6 (10-80)||(2578739-2578810)
chr6 (10-108)||(2377937-2378034)
chr6 (10-78)||(2579779-2579848)
chr6 (10-89)||(16107863-16107943)
chr6 (10-89)||(16454758-16454838)
chr6 (70-108)||(14789403-14789441)
chr6 (13-48)||(2579047-2579082)
[»] chr3 (10 HSPs)
chr3 (10-118)||(22303821-22303929)
chr3 (10-78)||(53577548-53577616)
chr3 (10-108)||(22304378-22304476)
chr3 (10-108)||(41360014-41360111)
chr3 (10-79)||(15773037-15773106)
chr3 (53-108)||(4823507-4823563)
chr3 (10-64)||(53577667-53577721)
chr3 (24-73)||(29644811-29644860)
chr3 (14-78)||(54018104-54018169)
chr3 (10-93)||(33803143-33803227)
[»] chr7 (8 HSPs)
chr7 (10-99)||(37532897-37532986)
chr7 (10-96)||(37533253-37533339)
chr7 (10-117)||(22566905-22567013)
chr7 (13-106)||(14681323-14681415)
chr7 (8-93)||(28300470-28300554)
chr7 (60-108)||(45697752-45697800)
chr7 (10-80)||(40094672-40094742)
chr7 (27-89)||(48243356-48243419)
[»] chr2 (8 HSPs)
chr2 (10-118)||(29676711-29676819)
chr2 (10-78)||(36178513-36178581)
chr2 (10-108)||(14745544-14745641)
chr2 (8-93)||(7598409-7598494)
chr2 (10-57)||(37106107-37106154)
chr2 (10-92)||(40734067-40734149)
chr2 (10-108)||(5542876-5542973)
chr2 (10-48)||(35580661-35580699)
[»] chr4 (9 HSPs)
chr4 (10-81)||(45496734-45496805)
chr4 (10-103)||(3340990-3341083)
chr4 (10-118)||(10246103-10246211)
chr4 (13-108)||(18933008-18933102)
chr4 (13-108)||(41370543-41370637)
chr4 (14-93)||(20826024-20826104)
chr4 (10-80)||(44621182-44621253)
chr4 (10-79)||(2740874-2740943)
chr4 (10-90)||(23817572-23817652)
[»] chr1 (12 HSPs)
chr1 (22-105)||(11977141-11977224)
chr1 (13-108)||(48588739-48588833)
chr1 (10-117)||(26661766-26661873)
chr1 (10-89)||(44290720-44290798)
chr1 (10-108)||(50051902-50051999)
chr1 (10-108)||(48588364-48588461)
chr1 (10-80)||(34364690-34364761)
chr1 (10-93)||(34649622-34649705)
chr1 (14-88)||(22077392-22077466)
chr1 (13-80)||(66377-66444)
chr1 (10-48)||(3537456-3537494)
chr1 (10-47)||(9956092-9956129)
[»] chr8 (5 HSPs)
chr8 (10-108)||(1014122-1014219)
chr8 (10-108)||(9309164-9309262)
chr8 (10-108)||(3669870-3669967)
chr8 (13-93)||(147637-147718)
chr8 (10-57)||(34835058-34835104)
[»] chr5 (6 HSPs)
chr5 (11-108)||(9498534-9498629)
chr5 (10-106)||(6500634-6500729)
chr5 (9-96)||(32487575-32487661)
chr5 (10-92)||(38427403-38427486)
chr5 (10-80)||(26075063-26075133)
chr5 (1-80)||(26074403-26074482)
[»] scaffold0078 (1 HSPs)
scaffold0078 (60-108)||(5214-5262)
[»] scaffold0702 (1 HSPs)
scaffold0702 (10-108)||(392-489)
[»] scaffold0391 (1 HSPs)
scaffold0391 (10-90)||(1383-1464)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 6e-53; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 6e-53
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 29518686 - 29518794
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgta 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29518686 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgacggtacaagcagcaagtggctccttgta 29518785  T
Q  110 cggcaacgg 118  Q
    |||||||||    
T  29518786 cggcaacgg 29518794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 10074336 - 10074240
Alignment:
Q  12 gtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    |||||||||||||||||||| ||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  10074336 gtatcagagccccggttcgaagaagggtacgaccgaggccgccggtcagttgcgcagaaagtagcaacgacggtacaagcagcaagtggctcattgt 10074240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 26544230 - 26544321
Alignment:
Q  8 actggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtgg 100  Q
    |||||||| ||||||||||||||| |||||||||||||||| | ||||| || ||||| ||||||| |||||| |||||||| ||||||||||    
T  26544230 actggtattagagccccggttcgatgaagggtgcgaccgaggcagccgg-tatttgcgtagaaagccgcaacgctggtacaaacagcaagtgg 26544321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 3409470 - 3409567
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    |||||||||||||||||||||||||||  |  ||||||| | ||||||  |||||| | ||||||||||||  |||||||| |||||||||||||||||    
T  3409470 tggtatcagagccccggttcgacgaagtatatgaccgaggcagccggtc-gttgcgtaaaaagcagcaacggcggtacaagtagcaagtggctccttgt 3409567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 2579467 - 2579387
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggt-tagttgcgcagaaagcagcaacgatggtacaa 89  Q
    |||||||||||||||||||||||||| ||| |||||||| | ||||||  | ||||||||||||||||||||  |||||||    
T  2579467 tggtatcagagccccggttcgacgaacggtacgaccgaggcagccggtccacttgcgcagaaagcagcaacggcggtacaa 2579387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 2578810 - 2578739
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttag-ttgcgcagaaagcagcaacg 80  Q
    |||||||||||||||||||||||||||||| |||||||| | ||||||  | ||| ||||||||||||||||    
T  2578810 tggtatcagagccccggttcgacgaagggtacgaccgaggcagccggtccgcttgggcagaaagcagcaacg 2578739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 2377937 - 2378034
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    |||||||||||||||||||||||||||||||| ||||||   | ||| | |||||| ||||||  |||||    |||||||||||||||||||||||||    
T  2377937 tggtatcagagccccggttcgacgaagggtgcaaccgaggtagtcgg-tcgttgcgaagaaagtcgcaacagcagtacaagcagcaagtggctccttgt 2378034  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 2579848 - 2579779
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttag-ttgcgcagaaagcagcaa 78  Q
    |||||||||||||||||||| ||||||||| |||||||| | ||| ||| | ||||||||||||||||||    
T  2579848 tggtatcagagccccggttccacgaagggtacgaccgaggcagccagttcgtttgcgcagaaagcagcaa 2579779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 16107863 - 16107943
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggt-tagttgcgcagaaagcagcaacgatggtacaa 89  Q
    ||||||||||||||||||||||||||||||  ||||||| | ||||||  | ||| ||||||||||||||||  |||||||    
T  16107863 tggtatcagagccccggttcgacgaagggtatgaccgaggcagccggtccatttgtgcagaaagcagcaacggcggtacaa 16107943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 16454758 - 16454838
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttag-ttgcgcagaaagcagcaacgatggtacaa 89  Q
    |||||||||||||| ||||||||||||||| ||||||||    |||||  | |||||||||||||| |||||| |||||||    
T  16454758 tggtatcagagcccaggttcgacgaagggtacgaccgaggtaaccggtccgtttgcgcagaaagcaacaacgacggtacaa 16454838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 14789441 - 14789403
Alignment:
Q  70 aagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  14789441 aagcagcaacgacggtaaaagcagcaagtggctccttgt 14789403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 2579082 - 2579047
Alignment:
Q  13 tatcagagccccggttcgacgaagggtgcgaccgag 48  Q
    |||||||| |||||||||||||||||| ||||||||    
T  2579082 tatcagagtcccggttcgacgaagggtacgaccgag 2579047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 1e-38; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 22303929 - 22303821
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgta 109  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||     
T  22303929 tggtatcagagccccggttcgacgaagggtgcgacagaggccgccggtcagttgcgcagaaagcagcaacgacggtacaagcagcaagtggcttcttgtg 22303830  T
Q  110 cggcaacgg 118  Q
    | |||||||    
T  22303829 cagcaacgg 22303821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 53577548 - 53577616
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaa 78  Q
    ||||||||||| |||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  53577548 tggtatcagagtcccggttcgacgaagggtacgaccgaggccgccggtcagttgcgcagaaagcagcaa 53577616  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 22304378 - 22304476
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagc-agcaacgatggtacaagcagcaagtggctccttgt 108  Q
    |||||||||||||||||||||||||||||| |||||||| | ||||| | |||||||||||||| ||||||    ||||||| || ||||||||||||||    
T  22304378 tggtatcagagccccggttcgacgaagggtacgaccgaggcagccgg-tcgttgcgcagaaagcaagcaacagctgtacaagtagtaagtggctccttgt 22304476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 41360111 - 41360014
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagc--agcaagtggctccttg 107  Q
    |||||||||||| |||||||||||||| || ||||||  |  ||||||  |||| ||||||||||||||||| |||||||||  ||||||||||||||||    
T  41360111 tggtatcagagcgccggttcgacgaagagtacgaccggca--gccggtc-gttgtgcagaaagcagcaacgacggtacaagcagagcaagtggctccttg 41360015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 15773037 - 15773106
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaac 79  Q
    |||||||||||||| | ||||||||||||| ||| |||| |||||||| ||||  |||||||||||||||    
T  15773037 tggtatcagagccctgattcgacgaagggtacgatcgaggccgccggtcagttatgcagaaagcagcaac 15773106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 4823507 - 4823563
Alignment:
Q  53 ccggttagttgcgcagaaagca-gcaacgatggtacaagcagcaagtggctccttgt 108  Q
    ||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||    
T  4823507 ccggtcagttgcgcagaaagcaagcaacggtggtacaagcaacaagtggctccttgt 4823563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 53577667 - 53577721
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgc 64  Q
    ||||||||||| |||||||||| ||||||| |||||||| |||||||| ||||||    
T  53577667 tggtatcagagtcccggttcgaagaagggtacgaccgaggccgccggtcagttgc 53577721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 29644860 - 29644811
Alignment:
Q  24 cggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagc 73  Q
    |||||||||||||||| |||||||| |||||| | | |||||||||||||    
T  29644860 cggttcgacgaagggtacgaccgaggccgccgttcaattgcgcagaaagc 29644811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 54018169 - 54018104
Alignment:
Q  14 atcagagccccggttcgacgaagggtgcgaccgagaccgccggttag-ttgcgcagaaagcagcaa 78  Q
    |||||||| ||||||| ||||||||||||| |||| | ||||||  | ||||||||||||||||||    
T  54018169 atcagagctccggttcaacgaagggtgcgatcgaggcagccggtccgtttgcgcagaaagcagcaa 54018104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 33803227 - 33803143
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttag-ttgcgcagaaagcagcaacgatggtacaagcag 93  Q
    ||||||||||||| || ||||||||||||| |||| ||| | ||| ||  | ||||||| |||||||||||||  ||||||||||    
T  33803227 tggtatcagagcctcgattcgacgaagggtacgactgaggcagccagtccgtttgcgcataaagcagcaacgacagtacaagcag 33803143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 2e-34; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 37532986 - 37532897
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtg 99  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  37532986 tggtatcagagccccggttcgacgaagggtgcgaccgaggccgccggtcagttgcgcagaaagcagcaacgactgtacaagcagcaagtg 37532897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 37533339 - 37533253
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaa 96  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||    
T  37533339 tggtatcagagccccggttcgacgaagggtgcgaccgaggccgccggtcagttgcgtagaaagcagcaacgacggtacaagcagcaa 37533253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 22567013 - 22566905
Alignment:
Q  10 tggtatcagagcccc-ggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    ||||||||||||||| ||| ||||||||||| ||||| || || ||||||||||| ||||||| |||||| || |||||||| |||||||||||||||||    
T  22567013 tggtatcagagcccccggtccgacgaagggtacgaccaaggccaccggttagttgtgcagaaaacagcaaagacggtacaagaagcaagtggctccttgt 22566914  T
Q  109 acggcaacg 117  Q
     | ||||||    
T  22566913 gcagcaacg 22566905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 14681323 - 14681415
Alignment:
Q  13 tatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctcctt 106  Q
    |||||||||||||||| || |||||||||||||||| | ||||||| |||||||||||||| |||||   ||||||| |||||| |||||||||    
T  14681323 tatcagagccccggttggatgaagggtgcgaccgaggcagccggtt-gttgcgcagaaagccgcaacagcggtacaaacagcaaatggctcctt 14681415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 28300554 - 28300470
Alignment:
Q  8 actggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcag 93  Q
    |||||||||||||||  | ||||||||||||| |||||||| | | ||||   ||||||||||||||||||||| |||||||||||    
T  28300554 actggtatcagagcct-gattcgacgaagggtacgaccgaggcagtcggtccattgcgcagaaagcagcaacgacggtacaagcag 28300470  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 45697752 - 45697800
Alignment:
Q  60 gttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    |||||||||||||||||||||  |||||||| |||||||||||||||||    
T  45697752 gttgcgcagaaagcagcaacggcggtacaagaagcaagtggctccttgt 45697800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 40094742 - 40094672
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttag-ttgcgcagaaagcagcaacg 80  Q
    |||||||||||||| | ||||||||||||| |||||||| | ||||||  | |||||||||||| |||||||    
T  40094742 tggtatcagagccctg-ttcgacgaagggtacgaccgaggcagccggtccgtttgcgcagaaagtagcaacg 40094672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 48243419 - 48243356
Alignment:
Q  27 ttcgacgaagggtgcgaccgagaccgccggttagtt-gcgcagaaagcagcaacgatggtacaa 89  Q
    ||||||||||||| |||||||| | ||||||  ||| ||||||||||||||||||  |||||||    
T  48243419 ttcgacgaagggtacgaccgaggcagccggtccgtttgcgcagaaagcagcaacggcggtacaa 48243356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 1e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 29676711 - 29676819
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgta 109  Q
    |||||||||||||||||||| |||||||||  ||| ||| |||||| | |||||||||||||||| ||||||  |||||||||||||||||||||||||     
T  29676711 tggtatcagagccccggttcaacgaagggtatgactgaggccgccgatcagttgcgcagaaagcaacaacgacagtacaagcagcaagtggctccttgtg 29676810  T
Q  110 cggcaacgg 118  Q
    | |||||||    
T  29676811 cagcaacgg 29676819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 36178581 - 36178513
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaa 78  Q
    |||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||    
T  36178581 tggtatcagagccccggttcgacgaagggtgcgaccaaggccaccggtcagttgcgcagaaagcagcaa 36178513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 14745641 - 14745544
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    |||||||||||||||||||||| ||||||||||||| || | ||| | | ||| |||||||||| |||||||  ||||||||| |||||||||||||||    
T  14745641 tggtatcagagccccggttcgatgaagggtgcgaccaaggcagcc-gatcgttacgcagaaagccgcaacgacagtacaagcaacaagtggctccttgt 14745544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 7598409 - 7598494
Alignment:
Q  8 actggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcag 93  Q
    |||||||||| ||||| ||||||||||||||| |||| |||   ||||||  |||||||||||||||||||||| |||||||||||    
T  7598409 actggtatcaaagcccaggttcgacgaagggtacgactgaggtagccggtccgttgcgcagaaagcagcaacgacggtacaagcag 7598494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 37106107 - 37106154
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggt 57  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  37106107 tggtatcagagccccggttcgacgaagggtgcgactgaggccgccggt 37106154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 40734067 - 40734149
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagtt-gcgcagaaagcagcaacgatggtacaagca 92  Q
    |||||||||||||||| |||| | |||||| |||||||| | ||||||| ||| ||||||||||||||||| | ||||||||||    
T  40734067 tggtatcagagccccg-ttcgtcaaagggtacgaccgaggcagccggttcgtttgcgcagaaagcagcaacaacggtacaagca 40734149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 5542973 - 5542876
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    ||||||||||||  ||||||||||| |  ||| |||||| | | ||||  |||| ||||||||| ||||||  |||||||||| |||||||||||||||    
T  5542973 tggtatcagagcttcggttcgacgacgaatgcaaccgaggcagtcggtc-gttgtgcagaaagccgcaacggcggtacaagcaacaagtggctccttgt 5542876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 35580699 - 35580661
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgag 48  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  35580699 tggtatcagagccccggttcgacgaagggtatgaccgag 35580661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 5e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 45496734 - 45496805
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacga 81  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||    
T  45496734 tggtatcagagccccggttcgacgaagggtgcgaccgaggccgccggtcagttgcgtagaaagcagcaacga 45496805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 3340990 - 3341083
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctc 103  Q
    |||||||||||||||||||||||||| ||| ||||||||  ||| ||| ||||||||||||||||||||||| ||||||| || ||||||||||    
T  3340990 tggtatcagagccccggttcgacgaacggtacgaccgaggtcgctggtcagttgcgcagaaagcagcaacgacggtacaaacaacaagtggctc 3341083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 10246103 - 10246211
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgta 109  Q
    |||||||||| ||||||||||| ||||||| |||| ||| ||||| || ||||| ||||||||||||||||| |||||||||| ||||||||| |||||     
T  10246103 tggtatcagaaccccggttcgatgaagggtacgactgaggccgcctgtcagttgtgcagaaagcagcaacgacggtacaagcaacaagtggcttcttgtg 10246202  T
Q  110 cggcaacgg 118  Q
    | |||||||    
T  10246203 cagcaacgg 10246211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 18933102 - 18933008
Alignment:
Q  13 tatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    |||||||||||||||||||||||| ||||||||||| | ||||| | |||| ||||||||  ||||||  ||||||||||||||||||||||||||    
T  18933102 tatcagagccccggttcgacgaagtgtgcgaccgaggcagccgg-tggttgtgcagaaagtcgcaacggcggtacaagcagcaagtggctccttgt 18933008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 41370543 - 41370637
Alignment:
Q  13 tatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    ||||||||||||  |||||||||||||||||||||| | ||||| | ||||| |||||||| ||||||  |||||||||||||||| |||||||||    
T  41370543 tatcagagcccccattcgacgaagggtgcgaccgaggcagccgg-tcgttgcacagaaagccgcaacggcggtacaagcagcaagtagctccttgt 41370637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 20826024 - 20826104
Alignment:
Q  14 atcagagccccggttcgacgaagggtgcgaccgagaccgccggtt-agttgcgcagaaagcagcaacgatggtacaagcag 93  Q
    |||||||||||  ||||||||||||| |||||||| | ||||||  | ||||||||||||||||||||  |||||||||||    
T  20826024 atcagagccccaattcgacgaagggtacgaccgaggcagccggtccatttgcgcagaaagcagcaacggcggtacaagcag 20826104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 44621182 - 44621253
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttag-ttgcgcagaaagcagcaacg 80  Q
    |||||||||||||| |||| |||||||||| |||||||||| ||||||  | || |||||||||||||||||    
T  44621182 tggtatcagagccctggtttgacgaagggtacgaccgagacagccggtccgttttcgcagaaagcagcaacg 44621253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 2740874 - 2740943
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttag-ttgcgcagaaagcagcaac 79  Q
    |||||||||||||||| ||||||||||||| |||||||| | |||| |  | |||||||||||||||||||    
T  2740874 tggtatcagagccccg-ttcgacgaagggtacgaccgaggcagccgatccgtttgcgcagaaagcagcaac 2740943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 23817652 - 23817572
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagtt-gcgcagaaagcagcaacgatggtacaag 90  Q
    |||||||| ||||||  ||||||||||||| ||| |||| | ||||||  ||| ||||||||||||||||||| ||||||||    
T  23817652 tggtatcatagcccca-ttcgacgaagggtacgatcgaggcagccggtctgtttgcgcagaaagcagcaacgacggtacaag 23817572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 5e-26; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 11977141 - 11977224
Alignment:
Q  22 cccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctcct 105  Q
    ||||||| |||||||||| |||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  11977141 cccggtttgacgaagggtacgaccgaggccgtcggtcagttgcgcagaaagcagcaacgacggtacaagcagcaagtggctcct 11977224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 48588833 - 48588739
Alignment:
Q  13 tatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    |||||||||||||||||||||||||||||||| ||| | |||||| | ||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  48588833 tatcagagccccggttcgacgaagggtgcgactgaggcagccggtca-ttgtgcagaaagctgcaacgacggtacaagcagcaagtggctccttgt 48588739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 26661873 - 26661766
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgta 109  Q
    |||||| ||| || || ||||||||||||| |||||||| ||||| || | ||||||||||||||||||||| |||||||||| |||||||||||||||     
T  26661873 tggtattagaacctcgattcgacgaagggtacgaccgaggccgccagtcaattgcgcagaaagcagcaacgacggtacaagcaacaagtggctccttgtg 26661774  T
Q  110 cggcaacg 117  Q
    | ||||||    
T  26661773 cagcaacg 26661766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 44290798 - 44290720
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaa 89  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| |||||| ||||||||    
T  44290798 tggtatcagagccccggttcgacgaagggtgcgaccgaggcagccggtt-gttgcgcagaaagccgcaacggtggtacaa 44290720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 50051999 - 50051902
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    ||||||||||||||||||||||| ||||| ||||||||| | ||||||  |||| ||||||||| |||||||  |||||||||||||||||||||||||    
T  50051999 tggtatcagagccccggttcgacaaagggcgcgaccgaggcagccggtg-gttgggcagaaagccgcaacgacagtacaagcagcaagtggctccttgt 50051902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 48588461 - 48588364
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    ||||||||||| |||||||| ||||||||||| |||||| | ||||||| |||||||||||||| ||||||| | ||||| || |||||||||||||||    
T  48588461 tggtatcagagtcccggttcaacgaagggtgcaaccgaggcagccggtt-gttgcgcagaaagccgcaacgacgatacaaacaacaagtggctccttgt 48588364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 34364690 - 34364761
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttag-ttgcgcagaaagcagcaacg 80  Q
    |||||||||||||||||||||||||||||| ||||| |||| ||||||  | ||| ||||||||||||||||    
T  34364690 tggtatcagagccccggttcgacgaagggtacgacccagacagccggtccgtttgtgcagaaagcagcaacg 34364761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 34649622 - 34649705
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagtt-gcgcagaaagcagcaacgatggtacaagcag 93  Q
    |||||||||||||||| ||||| ||||||| |||||||| | ||||||  ||| |||||||||||| |||||| |||||||||||    
T  34649622 tggtatcagagccccg-ttcgatgaagggtacgaccgaggcagccggtccgtttgcgcagaaagcaacaacgacggtacaagcag 34649705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 22077466 - 22077392
Alignment:
Q  14 atcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtaca 88  Q
    |||||||||| ||||||||||||||| ||||| || | ||||||  |||||| ||||| ||||||||| ||||||    
T  22077466 atcagagcccaggttcgacgaagggtacgaccaaggcagccggtccgttgcggagaaaccagcaacgacggtaca 22077392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 66444 - 66377
Alignment:
Q  13 tatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacg 80  Q
    |||||||| |||||||||||||||||| |||||||| | ||||||  |||||| ||||| || |||||    
T  66444 tatcagagtcccggttcgacgaagggtacgaccgaggcagccggtccgttgcggagaaaccaacaacg 66377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 3537494 - 3537456
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgag 48  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  3537494 tggtatcagagccacggttcgacgaagggtacgaccgag 3537456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 9956092 - 9956129
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccga 47  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  9956092 tggtatcagagcctcggttcgacgaagggtacgaccga 9956129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 2e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 1014219 - 1014122
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    |||||||||||||||||||||||||||||| |||| ||| | ||||||  |||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  1014219 tggtatcagagccccggttcgacgaagggtacgactgaggcagccggtc-gttgcgcagaaagccgcaacggcggtacaagcagcaagtggctccttgt 1014122  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 9309164 - 9309262
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    |||||||||| |||| |||||||| ||||| |||||||| |||||||| ||||||| |||||||| |||||| || |||||||||||||||||||||||    
T  9309164 tggtatcagaaccccagttcgacggagggtacgaccgaggccgccggtcagttgcgtagaaagcaacaacgacggcacaagcagcaagtggctccttgt 9309262  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 3669870 - 3669967
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    |||||||||||||||  ||| | ||||||| ||| |||| | ||||||  |||||||||||||| ||||| | |||||||||| |||||||||||||||    
T  3669870 tggtatcagagccccccttcaatgaagggtacgatcgaggcagccggtc-gttgcgcagaaagccgcaacaacggtacaagcaacaagtggctccttgt 3669967  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 147637 - 147718
Alignment:
Q  13 tatcagagccccggttcgacgaagggtgcgaccgagaccgccggttag-ttgcgcagaaagcagcaacgatggtacaagcag 93  Q
    |||||||||||||||||||| |||||| ||| |||| | ||| ||  | |||||||||||||||||||   |||||||||||    
T  147637 tatcagagccccggttcgacaaagggtacgatcgaggcagccagtccgtttgcgcagaaagcagcaacagcggtacaagcag 147718  T

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Target: chr8; HSP #5
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 34835058 - 34835104
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggt 57  Q
    |||||||||||||| ||||||||||||||| |||||||| | ||||||    
T  34835058 tggtatcagagccc-ggttcgacgaagggtacgaccgaggcagccggt 34835104  T

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Target: chr5 (Bit Score: 46; Significance: 1e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 9498629 - 9498534
Alignment:
Q  11 ggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    ||||||||||||||| |||||| |||||| |||||||| | ||||||  |||||||||||||| ||||||  | ||||||||||||||||||||||||    
T  9498629 ggtatcagagccccg-ttcgacaaagggtacgaccgaggcagccggtc-gttgcgcagaaagctgcaacggcgctacaagcagcaagtggctccttgt 9498534  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 6500634 - 6500729
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctcctt 106  Q
    |||||||||||  ||||||||||||||||||| |||||| | ||| ||  |||||||||||||| ||||||  |||| |||||||||||||||||||    
T  6500634 tggtatcagagttccggttcgacgaagggtgcaaccgaggcagccagtc-gttgcgcagaaagccgcaacggcggtataagcagcaagtggctcctt 6500729  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 32487575 - 32487661
Alignment:
Q  9 ctggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaa 96  Q
    ||||||||||||||||| |||||||||||||||||| ||| | ||| | | |||| ||||||||| ||||||  ||||||||||||||    
T  32487575 ctggtatcagagccccgattcgacgaagggtgcgactgaggcagcc-gatcgttgtgcagaaagccgcaacggcggtacaagcagcaa 32487661  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 38427403 - 38427486
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggt-tagttgcgcagaaagcagcaacgatggtacaagca 92  Q
    |||||| |||||||||||||||||||||||| |||| |||| ||| || |  ||||||||||| ||||||||| | ||||||||    
T  38427403 tggtattagagccccggttcgacgaagggtgtgaccaagacagccagtctgtttgcgcagaaaccagcaacgacgatacaagca 38427486  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 26075133 - 26075063
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagtt-gcgcagaaagcagcaacg 80  Q
    ||||||||||||| || ||||||||||||| |||||||| | ||||||  ||| ||||||||||||||||||    
T  26075133 tggtatcagagcctcg-ttcgacgaagggtacgaccgaggcagccggtctgtttgcgcagaaagcagcaacg 26075063  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 26074403 - 26074482
Alignment:
Q  1 cccaacaactggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggt-tagttgcgcagaaagcagcaacg 80  Q
    |||||||| ||| ||||||||||||||| ||| |||||| |||||||||| ||  || |  ||||||||||||||||||||    
T  26074403 cccaacaa-tggcatcagagccccggtttgacaaagggtacgaccgagacagctagtctgtttgcgcagaaagcagcaacg 26074482  T

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Target: scaffold0078 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 5214 - 5262
Alignment:
Q  60 gttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  5214 gttgcgcagaaagcagcaacggcggtacaagcagcaagtggctccttgt 5262  T

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Target: scaffold0702 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 489 - 392
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttagttgcgcagaaagcagcaacgatggtacaagcagcaagtggctccttgt 108  Q
    |||||||||||||||||||||||||||||||| ||||||   | ||| | |||||| ||||||  |||||    |||||||||||||||||||||||||    
T  489 tggtatcagagccccggttcgacgaagggtgcaaccgaggtagtcgg-tcgttgcgaagaaagtcgcaacagcagtacaagcagcaagtggctccttgt 392  T

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Target: scaffold0391 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 1464 - 1383
Alignment:
Q  10 tggtatcagagccccggttcgacgaagggtgcgaccgagaccgccggttag-ttgcgcagaaagcagcaacgatggtacaag 90  Q
    ||||||||||||||||||||||||||||||  ||||||| | ||||||  | ||| ||||||||||||||||  ||||||||    
T  1464 tggtatcagagccccggttcgacgaagggtatgaccgaggcagccggtccgtttgtgcagaaagcagcaacggcggtacaag 1383  T

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