View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5886-59 (Length: 113)

Name: Solexa-NF5886-59
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5886-59
Solexa-NF5886-59
[»] chr1 (11 HSPs)
chr1 (24-113)||(17981718-17981807)
chr1 (26-92)||(47050424-47050489)
chr1 (31-92)||(14650492-14650553)
chr1 (31-92)||(14660283-14660344)
chr1 (25-92)||(17653304-17653370)
chr1 (25-87)||(263044-263106)
chr1 (28-92)||(17478645-17478708)
chr1 (31-92)||(19657307-19657368)
chr1 (31-91)||(16100965-16101025)
chr1 (31-91)||(16104423-16104483)
chr1 (54-92)||(29289007-29289045)
[»] scaffold0012 (1 HSPs)
scaffold0012 (24-113)||(182815-182904)
[»] chr6 (16 HSPs)
chr6 (25-92)||(27684243-27684310)
chr6 (25-92)||(27691562-27691629)
chr6 (26-92)||(28040921-28040986)
chr6 (31-92)||(27527470-27527531)
chr6 (25-92)||(17357730-17357797)
chr6 (25-92)||(22014188-22014254)
chr6 (26-92)||(25478168-25478233)
chr6 (31-92)||(6952438-6952498)
chr6 (25-90)||(13142000-13142065)
chr6 (26-92)||(15970338-15970403)
chr6 (31-92)||(9815079-9815140)
chr6 (30-90)||(27651222-27651281)
chr6 (31-91)||(30130561-30130621)
chr6 (24-91)||(16694067-16694134)
chr6 (31-89)||(33055859-33055917)
chr6 (31-88)||(33063339-33063396)
[»] chr2 (9 HSPs)
chr2 (25-92)||(31714090-31714157)
chr2 (25-92)||(39154637-39154704)
chr2 (25-92)||(44324296-44324362)
chr2 (26-92)||(45332881-45332946)
chr2 (31-92)||(4406379-4406440)
chr2 (31-92)||(9311064-9311125)
chr2 (31-91)||(10416164-10416224)
chr2 (31-91)||(4698122-4698182)
chr2 (26-92)||(808589-808654)
[»] chr4 (6 HSPs)
chr4 (26-92)||(27561047-27561112)
chr4 (24-92)||(51533856-51533922)
chr4 (31-92)||(4763405-4763466)
chr4 (24-92)||(18694136-18694202)
chr4 (32-92)||(27733593-27733652)
chr4 (25-92)||(54351779-54351845)
[»] chr5 (4 HSPs)
chr5 (26-91)||(15599043-15599107)
chr5 (33-113)||(27198198-27198278)
chr5 (26-92)||(5519383-5519448)
chr5 (26-92)||(42785708-42785773)
[»] chr3 (9 HSPs)
chr3 (31-92)||(28058369-28058430)
chr3 (31-92)||(28068794-28068855)
chr3 (24-91)||(9436009-9436076)
chr3 (31-92)||(28104035-28104096)
chr3 (28-90)||(23397923-23397984)
chr3 (32-92)||(6911242-6911302)
chr3 (26-86)||(19435232-19435291)
chr3 (26-89)||(17954693-17954755)
chr3 (43-92)||(5705490-5705539)
[»] scaffold0007 (1 HSPs)
scaffold0007 (25-92)||(60765-60831)
[»] scaffold0406 (1 HSPs)
scaffold0406 (26-92)||(3870-3935)
[»] scaffold0713 (1 HSPs)
scaffold0713 (31-92)||(934-995)
[»] scaffold0438 (2 HSPs)
scaffold0438 (27-92)||(10548-10612)
scaffold0438 (27-92)||(7563-7627)
[»] chr8 (6 HSPs)
chr8 (27-92)||(26340387-26340451)
chr8 (26-92)||(4706562-4706627)
chr8 (31-92)||(15925158-15925219)
chr8 (26-88)||(18982643-18982704)
chr8 (26-92)||(28603022-28603087)
chr8 (24-92)||(26917249-26917315)
[»] chr7 (5 HSPs)
chr7 (26-92)||(36264128-36264193)
chr7 (31-92)||(28803777-28803838)
chr7 (24-92)||(29466908-29466977)
chr7 (31-92)||(44060056-44060117)
chr7 (31-91)||(18087930-18087990)
[»] scaffold0002 (2 HSPs)
scaffold0002 (26-91)||(406880-406944)
scaffold0002 (26-92)||(412883-412948)
[»] scaffold0036 (1 HSPs)
scaffold0036 (38-103)||(31709-31771)


Alignment Details
Target: chr1 (Bit Score: 74; Significance: 2e-34; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 17981718 - 17981807
Alignment:
Q  24 tgaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaaatgcacaaataattgactttc 113  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||    
T  17981718 tgaaagagtaagtcacaaagacttattgaggagacaacaatcaccaccaactagaagggaaacacacaaatgcacaaataattgactttc 17981807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 47050424 - 47050489
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| || ||||||||||||||||||    
T  47050424 aaagagtaagtcacaaggacttagtgag-agacaacaaccaccaccaactagaagggaaacacacaa 47050489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 14650553 - 14650492
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||    
T  14650553 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaa 14650492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 14660344 - 14660283
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||    
T  14660344 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaa 14660283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 17653304 - 17653370
Alignment:
Q  25 gaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||| || ||||||||||||||||||    
T  17653304 gaaagagtaagtcgcaaggacttagtgag-agacaacaaccaccaccaactagaagggaaacacacaa 17653370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 263106 - 263044
Alignment:
Q  25 gaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaaca 87  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||  | |||||||||||||    
T  263106 gaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaaca 263044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 17478645 - 17478708
Alignment:
Q  28 agagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||||||||| |||| |||||||||||||||| || |||||||||||| |||||    
T  17478645 agagtaagtcacaaggacttagtgag-agacaacaaccaccaccaactagaagggaaacgcacaa 17478708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 19657307 - 19657368
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    |||||||| || |||||| |||||||||||||| |||||| || ||||||||||||||||||    
T  19657307 gtaagtcataaagacttagtgaggagacaacaatcaccaccaactagaagggaaacacacaa 19657368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 16101025 - 16100965
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacaca 91  Q
    |||||||| || |||||| |||||||||||||| |||||| || |||||||||||||||||    
T  16101025 gtaagtcataaagacttagtgaggagacaacaatcaccaccaactagaagggaaacacaca 16100965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 16104483 - 16104423
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacaca 91  Q
    |||||||| || |||||| |||||||||||||| |||||| || |||||||||||||||||    
T  16104483 gtaagtcataaagacttagtgaggagacaacaatcaccaccaactagaagggaaacacaca 16104423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 29289007 - 29289045
Alignment:
Q  54 gagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  29289007 gagacaacaaccaccaccaactagaagggaaacacacaa 29289045  T

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Target: scaffold0012 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 182815 - 182904
Alignment:
Q  24 tgaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaaatgcacaaataattgactttc 113  Q
    ||||||| ||||||||||| |||||  ||||||||||||| |||||| || ||||||| |||||||||| ||||||||||||||||||||    
T  182815 tgaaagactaagtcacaagtacttagggaggagacaacaatcaccaccaactagaaggaaaacacacaagtgcacaaataattgactttc 182904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 6e-19; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 27684310 - 27684243
Alignment:
Q  25 gaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||  | ||||||||||||||||||    
T  27684310 gaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaacacacaa 27684243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 27691629 - 27691562
Alignment:
Q  25 gaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||  | ||||||||||||||||||    
T  27691629 gaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaacacacaa 27691562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 28040986 - 28040921
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| || ||||||||||||||||||    
T  28040986 aaagagtaagtcacaaggacttagtgag-agacaacaaccaccaccaactagaagggaaacacacaa 28040921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 27527531 - 27527470
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||    
T  27527531 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaa 27527470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 17357797 - 17357730
Alignment:
Q  25 gaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||  | ||||||| ||||||||||    
T  17357797 gaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaaggaaaacacacaa 17357730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 22014254 - 22014188
Alignment:
Q  25 gaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||| || ||||||||||||||||||    
T  22014254 gaaagagtaagtcgcaaggacttagtgag-agacaacaaccaccaccaactagaagggaaacacacaa 22014188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 25478168 - 25478233
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||||||||||| |||| ||||||||||||| || || ||||||||||||||||||    
T  25478168 aaagagtaagtcacaaggacttagtgag-agacaacaaccactaccaactagaagggaaacacacaa 25478233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 6952498 - 6952438
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    |||||||||||||||||| |||| ||||||||||||||||||| ||||||| ||||||||||    
T  6952498 gtaagtcacaaggacttagtgag-agacaacaaccaccactaagtagaaggaaaacacacaa 6952438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 13142000 - 13142065
Alignment:
Q  25 gaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacac 90  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||| |  ||||||| |||||||    
T  13142000 gaaagagtaagccacaaggacttagtgaggagacaacaaccaccactgacaagaagggtaacacac 13142065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 15970338 - 15970403
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||| || |||||||| |||||||||    
T  15970338 aaagaataagtcacaaggacttagtgag-agacaacaaccaccaccaactagaagggcaacacacaa 15970403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 9815140 - 9815079
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||| |||| ||||||||||||| || || ||||||||||||||||||    
T  9815140 gtaagtcacaaagacttagtgagcagacaacaaccactaccaactagaagggaaacacacaa 9815079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 27651281 - 27651222
Alignment:
Q  30 agtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacac 90  Q
    ||||||||||||||||||| |||| |||||||||||||||| || ||||| ||||||||||    
T  27651281 agtaagtcacaaggacttagtgag-agacaacaaccaccaccaactagaaaggaaacacac 27651222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 30130621 - 30130561
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacaca 91  Q
    |||||||| || |||||| |||||||||||||| |||||| || |||||||||||||||||    
T  30130621 gtaagtcataaagacttagtgaggagacaacaatcaccaccaactagaagggaaacacaca 30130561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 16694067 - 16694134
Alignment:
Q  24 tgaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacaca 91  Q
    |||||||||||| ||| |||||||| ||||||||||||||| |||||  | ||||||| |||||||||    
T  16694067 tgaaagagtaagccacgaggacttagtgaggagacaacaacaaccaccgactagaaggaaaacacaca 16694134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 33055917 - 33055859
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacaca 89  Q
    |||||||| || |||||| |||||||||||||| |||||| || |||||||||||||||    
T  33055917 gtaagtcataaagacttagtgaggagacaacaatcaccaccaaatagaagggaaacaca 33055859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 33063396 - 33063339
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacac 88  Q
    |||||||| || |||||| |||||||||||||| |||||| || ||||| ||||||||    
T  33063396 gtaagtcataaagacttagtgaggagacaacaatcaccaccaaatagaatggaaacac 33063339  T

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Target: chr2 (Bit Score: 48; Significance: 6e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 31714157 - 31714090
Alignment:
Q  25 gaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||  | ||||||||||||||||||    
T  31714157 gaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaacacacaa 31714090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 39154637 - 39154704
Alignment:
Q  25 gaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||  | ||||||||||||||||||    
T  39154637 gaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaacacacaa 39154704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 44324362 - 44324296
Alignment:
Q  25 gaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||| || ||||||||||||||||||    
T  44324362 gaaagagtaagtcgcaaggacttagtgag-agacaacaaccaccaccaactagaagggaaacacacaa 44324296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 45332946 - 45332881
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    |||||||||||||| |||||||| |||| ||||||||||||| || || ||||||||||||||||||    
T  45332946 aaagagtaagtcacgaggacttagtgag-agacaacaaccactaccaactagaagggaaacacacaa 45332881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 4406440 - 4406379
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||| |||| ||||||||||||| || || ||||||||||||||||||    
T  4406440 gtaagtcacaaagacttagtgagaagacaacaaccactaccaactagaagggaaacacacaa 4406379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 9311064 - 9311125
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    |||||||| ||||||||| |||| ||||||||||||| || || ||||||||||||||||||    
T  9311064 gtaagtcataaggacttagtgagaagacaacaaccactaccaactagaagggaaacacacaa 9311125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 10416224 - 10416164
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacaca 91  Q
    |||||||| || |||||| |||||||||||||| |||||| || |||||||||||||||||    
T  10416224 gtaagtcataaagacttagtgaggagacaacaatcaccaccaactagaagggaaacacaca 10416164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 4698182 - 4698122
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacaca 91  Q
    |||||||| || |||||| |||||||||||||| |||||| || || ||||||||||||||    
T  4698182 gtaagtcataaagacttagtgaggagacaacaatcaccaccaactataagggaaacacaca 4698122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 808589 - 808654
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||| ||||||| ||| |||||||||| |||||| || |||| ||||||| |||||    
T  808589 aaagagtaagtcacagggacttagtga-gagacaacaatcaccaccaactagaggggaaacccacaa 808654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 27561047 - 27561112
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| || ||||||||||||||||||    
T  27561047 aaagagtaagtcacaaggacttagtgag-agacaacaaccaccaccaactagaagggaaacacacaa 27561112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 51533922 - 51533856
Alignment:
Q  24 tgaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||  | ||||||||||||||||||    
T  51533922 tgaaagagtaagtcacaaggacttagtga-gagacaacaaccaccac-cactagaagggaaacacacaa 51533856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 4763405 - 4763466
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||| |||| ||||||||||||| || || ||||||||||||||||||    
T  4763405 gtaagtcacaaagacttagtgagaagacaacaaccactaccaactagaagggaaacacacaa 4763466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 18694136 - 18694202
Alignment:
Q  24 tgaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||  | | ||||||||||||||||    
T  18694136 tgaaagagtaagtcacaaggacttagtga-gagacaacaaccaccac-cactggaagggaaacacacaa 18694202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 27733593 - 27733652
Alignment:
Q  32 taagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||||| |||| ||||||||||||| ||  | ||||||||||||||||||    
T  27733593 taagtcacaaggacttagtgag-agacaacaaccactacccactagaagggaaacacacaa 27733652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 54351779 - 54351845
Alignment:
Q  25 gaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| ||| |||||||| |||| |||||||||||||||| || ||||| ||||||| ||||    
T  54351779 gaaagagtaagccactaggacttagtgag-agacaacaaccaccaccaactagaaaggaaacatacaa 54351845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 1e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 15599107 - 15599043
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacaca 91  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| || |||||||||||||||||    
T  15599107 aaagagtaagtcacaaggacttagtgag-agacaacaaccaccaccaactagaagggaaacacaca 15599043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 27198198 - 27198278
Alignment:
Q  33 aagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaaatgcacaaataattgactttc 113  Q
    ||||||||| |||||| ||||||||||||||||||||| || ||||| | ||||||||||  ||||||||| || ||||||    
T  27198198 aagtcacaaagacttagtgaggagacaacaaccaccaccaactagaacgtaaacacacaagagcacaaatagttaactttc 27198278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 5519383 - 5519448
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||| ||||||| |||| ||||||||| |||||| || ||||||||||||||||||    
T  5519383 aaagagtaagtcacagggacttagtgag-agacaacaatcaccaccaaatagaagggaaacacacaa 5519448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 42785773 - 42785708
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||| ||||||| |||| ||||||||| |||||| || ||||||||||||||||||    
T  42785773 aaagagtaagtcacagggacttagtgag-agacaacaatcaccaccaactagaagggaaacacacaa 42785708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 1e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 28058369 - 28058430
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||    
T  28058369 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaa 28058430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 28068794 - 28068855
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||    
T  28068794 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaa 28068855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 9436009 - 9436076
Alignment:
Q  24 tgaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacaca 91  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| || || |||| |||||||||    
T  9436009 tgaaagagtaagtcacaaggacttagtggggagacaacaaccaccaccaactataaggaaaacacaca 9436076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 28104096 - 28104035
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||| |||||||| |||||||||||| || ||||||||||||||||||    
T  28104096 gtaagtcacaaagacttagtgaggagaaaacaaccaccaccaactagaagggaaacacacaa 28104035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 23397923 - 23397984
Alignment:
Q  28 agagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacac 90  Q
    ||||||||||||| ||||||| |||| |||||||||||||||| || ||||||||||||||||    
T  23397923 agagtaagtcacagggacttagtgag-agacaacaaccaccaccaactagaagggaaacacac 23397984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 6911242 - 6911302
Alignment:
Q  32 taagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    |||||||||| |||||| |||| ||||||||||||| || || ||||||||||||||||||    
T  6911242 taagtcacaaagacttagtgagaagacaacaaccactaccaactagaagggaaacacacaa 6911302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 19435291 - 19435232
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaac 86  Q
    ||||||||||| ||||||||||| |||| |||||||||||||||| || ||||||||||||    
T  19435291 aaagagtaagttacaaggacttagtgag-agacaacaaccaccaccaactagaagggaaac 19435232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 17954693 - 17954755
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacaca 89  Q
    ||||||||||||||||||||||| ||| |||||||||||||| ||  | |||||||||||||||    
T  17954693 aaagagtaagtcacaaggacttagtga-gagacaacaaccactacccactagaagggaaacaca 17954755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 5705490 - 5705539
Alignment:
Q  43 gacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    |||||| |||||||||||||| |||||| || ||||||||||||||||||    
T  5705490 gacttagtgaggagacaacaatcaccaccaactagaagggaaacacacaa 5705539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 60831 - 60765
Alignment:
Q  25 gaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||| || ||||||||||||||||||    
T  60831 gaaagagtaagtcgcaaggacttagtgag-agacaacaaccaccaccaactagaagggaaacacacaa 60765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 43; Significance: 6e-16; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 3935 - 3870
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||||||||||| |||| ||||||||||||| || || ||||||||||||||||||    
T  3935 aaagagtaagtcacaaggacttagtgag-agacaacaaccactaccaactagaagggaaacacacaa 3870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 995 - 934
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||| |||||||||| |||||||||| || ||||||||||||||||||    
T  995 gtaagtcacaaagacttagtgaggagacatcaaccaccaccaactagaagggaaacacacaa 934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 10548 - 10612
Alignment:
Q  27 aagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||||||| || |||| |||||||||||||||| || ||||||||||||||||||    
T  10548 aagagtaagtcacaaggacatagtgag-agacaacaaccaccaccaactagaagggaaacacacaa 10612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 7563 - 7627
Alignment:
Q  27 aagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||||||| ||  ||| |||||||||||||||| || ||||||||||||||||||    
T  7563 aagagtaagtcacaaggacatagggag-agacaacaaccaccaccaactagaagggaaacacacaa 7627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 26340387 - 26340451
Alignment:
Q  27 aagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||||||| || |||| |||||||||||||||| || ||||||||||||||||||    
T  26340387 aagagtaagtcacaaggacatagtgag-agacaacaaccaccaccaactagaagggaaacacacaa 26340451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 4706562 - 4706627
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||| ||||||| |||| ||||||||| |||||| || ||||||||||||||||||    
T  4706562 aaagagtaagtcacagggacttagtgag-agacaacaatcaccaccaactagaagggaaacacacaa 4706627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 15925219 - 15925158
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||| |||||||||||||| |||||| || |||||||||| |||||||    
T  15925219 gtaagtcacaaagacttagtgaggagacaacaatcaccaccaactagaagggaagcacacaa 15925158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 18982704 - 18982643
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacac 88  Q
    |||||||||||||| |||||||| |||| ||||||||||||| || || ||||||||||||||    
T  18982704 aaagagtaagtcacgaggacttagtgag-agacaacaaccactaccaactagaagggaaacac 18982643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 28603022 - 28603087
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||| | ||||||| |||| ||||||||| |||||| || ||||||||||||||||||    
T  28603022 aaagagtaagtcagagggacttagtgag-agacaacaatcaccaccaactagaagggaaacacacaa 28603087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 26917249 - 26917315
Alignment:
Q  24 tgaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    |||| |||||||| ||||||||||| ||| |||||||||||||||||  | ||||||||||||||||||    
T  26917249 tgaaggagtaagttacaaggacttagtga-gagacaacaaccaccac-cactagaagggaaacacacaa 26917315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 36264128 - 36264193
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||| ||  |||||||||||||||||    
T  36264128 aaagagtaagtcacagggacttagtgag-agacaacaaccaccaccaacaagaagggaaacacacaa 36264193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 28803838 - 28803777
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||| |||||||||||||| |||||| || ||||||||||| ||||||    
T  28803838 gtaagtcacaaagacttagtgaggagacaacaatcaccaccaactagaagggaaatacacaa 28803777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 29466908 - 29466977
Alignment:
Q  24 tgaaagagtaagtcacaaggacttattgaggagacaacaaccaccactaa-ttagaagggaaacacacaa 92  Q
    |||||| ||||||||||| || |||  |||||||||||||||||||| || |||||||||||||||||||    
T  29466908 tgaaagggtaagtcacaatgatttagcgaggagacaacaaccaccaccaacttagaagggaaacacacaa 29466977  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 44060056 - 44060117
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||||||||| |||||| |||| ||||||||||||| || || ||||| ||||||||||||    
T  44060056 gtaagtcacaaagacttagtgagaagacaacaaccactaccaactagaaaggaaacacacaa 44060117  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 18087990 - 18087930
Alignment:
Q  31 gtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacaca 91  Q
    ||||||||||| |||||  |||| ||| |||||||||||| || ||||||||||| |||||    
T  18087990 gtaagtcacaaagactttgtgagcagagaacaaccaccaccaactagaagggaaatacaca 18087930  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 406880 - 406944
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacaca 91  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||| || || ||||||||||||||    
T  406880 aaagattaagtcacaaggacttagtgag-agacaacaaccaccaccaactaaaagggaaacacaca 406944  T

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Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 412883 - 412948
Alignment:
Q  26 aaagagtaagtcacaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaa 92  Q
    ||||| |||||||||||| |||| |||| |||||||||| |||||||| || |||||||||||||||    
T  412883 aaagattaagtcacaaggtcttaatgag-agacaacaactaccactaactaaaagggaaacacacaa 412948  T

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Target: scaffold0036 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 31709 - 31771
Alignment:
Q  38 acaaggacttattgaggagacaacaaccaccactaattagaagggaaacacacaaatgcacaaata 103  Q
    ||||||||||| || ||||||||||||||||   || ||||||||||||| ||||  |||||||||    
T  31709 acaaggacttagtgcggagacaacaaccacc---aaatagaagggaaacatacaagggcacaaata 31771  T

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