View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5886-60 (Length: 112)
Name: Solexa-NF5886-60
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-60 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 88; Significance: 8e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 8e-43
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 39029539 - 39029650
Alignment:
| Q |
1 |
cagagagctgaaggccctgccacagtgttagcgatcggcactgcaactcctctaaactgcgcggatcagagcacatatccagacttctacttccacatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
39029539 |
cagagagctgaaggccctgccacagtgttagcgatcggcactgcaaatcctctaaactgcgtggatcagagtacatatccagacttctacttccgcatca |
39029638 |
T |
|
| Q |
101 |
cacatagagagc |
112 |
Q |
| |
|
|| |||| |||| |
|
|
| T |
39029639 |
caaatagtgagc |
39029650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 37859878 - 37859777
Alignment:
| Q |
1 |
cagagagctgaaggccctgccacagtgttagcgatcggcactgcaactcctctaaactgcgcggatcagagcacatatccagacttctacttccacatca |
100 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| || ||||||||||||||||||| |||||||| ||| ||||||||||| || |||| ||| |||| ||||| |
|
|
| T |
37859878 |
cagagggctgatggccctgccaccgtgttggcaatcggcactgcaactcctcaaaactgcgtggaccagagcacataccctgactactatttccgcatca |
37859779 |
T |
|
| Q |
101 |
ca |
102 |
Q |
| |
|
|| |
|
|
| T |
37859778 |
ca |
37859777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 37863868 - 37863775
Alignment:
| Q |
1 |
cagagagctgaaggccctgccacagtgttagcgatcggcactgcaactcctctaaactgcgcggatcagagcacatatccagacttctacttcc |
94 |
Q |
| |
|
|||||||| |||||||||||||| || || || || |||||||||| ||||| |||||| | |||||||| |||||||| ||||| ||||||| |
|
|
| T |
37863868 |
cagagagccgaaggccctgccactgtcttcgcaataggcactgcaaatcctcaaaactgtgttgatcagagtacatatcctgacttttacttcc |
37863775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University