View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-61 (Length: 111)
Name: Solexa-NF5886-61
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-61 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 5e-44
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 32549494 - 32549583
Alignment:
| Q |
15 |
atttttaatacttaataatttagatgttcatttttagagatttttgaaaaaagcagaagttttgtctttgtttaactgaatgaaaataac |
104 |
Q |
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| T |
32549494 |
atttttaatacttaataatttagatgttcatttttagagatttttgaaaaaagcagaagttttgtctttgtttaactgaatgaaaataac |
32549583 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 38565560 - 38565647
Alignment:
| Q |
17 |
ttttaatacttaataatttagatgttcatttttagagatttttgaaaaaagcaga---agttttgtctttgtttaactgaatgaaaat |
101 |
Q |
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| T |
38565560 |
ttttgatactcaataatttagagattaatttttagagatttttaaaaaaagcagaagcagctttgtgtttgtttagcagaatgaaaat |
38565647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 30072348 - 30072260
Alignment:
| Q |
17 |
ttttaatacttaataatttagatgttcatttttagagatttttgaaaaaagcagaagtt-ttgtctttgtttaactgaatgaaaataac |
104 |
Q |
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| T |
30072348 |
ttttaatactcaatattttagagattaatttttagagatttttaaaaaaagtagaagttgttgtgtttgttttccataatgaaaataac |
30072260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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