View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5886-64 (Length: 108)

Name: Solexa-NF5886-64
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5886-64
Solexa-NF5886-64
[»] chr1 (16 HSPs)
chr1 (14-108)||(9082579-9082673)
chr1 (15-88)||(9096850-9096923)
chr1 (15-76)||(9142912-9142973)
chr1 (15-76)||(9152465-9152526)
chr1 (18-88)||(9056557-9056627)
chr1 (15-88)||(8964508-8964581)
chr1 (15-88)||(9105032-9105105)
chr1 (18-88)||(8874112-8874182)
chr1 (15-88)||(8999659-8999732)
chr1 (38-88)||(9098316-9098366)
chr1 (30-75)||(11033190-11033235)
chr1 (18-81)||(9318334-9318397)
chr1 (30-76)||(10979332-10979378)
chr1 (30-76)||(11010898-11010944)
chr1 (30-75)||(11007737-11007782)
chr1 (18-74)||(9234103-9234159)
[»] chr6 (1 HSPs)
chr6 (18-82)||(15927240-15927304)
[»] chr3 (1 HSPs)
chr3 (36-76)||(9159600-9159640)


Alignment Details
Target: chr1 (Bit Score: 71; Significance: 1e-32; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 9082579 - 9082673
Alignment:
Q  14 agggggagtgtcctataaagccgatgtttatagttttgggatgcttttgatggagatggcaagcaagaggaaaaatcggaacaccaaggcagagc 108  Q
    |||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  9082579 agggggagtgtcgtacaaggctgatgtttatagttttgggatgcttttgatggagatggcaagcaagaggaaaaacctgaacaccaaggcagagc 9082673  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 9096850 - 9096923
Alignment:
Q  15 gggggagtgtcctataaagccgatgtttatagttttgggatgcttttgatggagatggcaagcaagaggaaaaa 88  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| |||||    
T  9096850 gggggagtttcctataaagctgatgtttatagctttgggatgcttttgatggagatggcaggcaagagaaaaaa 9096923  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 9142912 - 9142973
Alignment:
Q  15 gggggagtgtcctataaagccgatgtttatagttttgggatgcttttgatggagatggcaag 76  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  9142912 gggggagtgtcctataaggccgatgtttatagtttcgggatgcttttgatggagatggcaag 9142973  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 9152465 - 9152526
Alignment:
Q  15 gggggagtgtcctataaagccgatgtttatagttttgggatgcttttgatggagatggcaag 76  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  9152465 gggggagtgtcctataaggccgatgtttatagttttgggatgcttttgatggagatgacaag 9152526  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 9056627 - 9056557
Alignment:
Q  18 ggagtgtcctataaagccgatgtttatagttttgggatgcttttgatggagatggcaagcaagaggaaaaa 88  Q
    |||||||| ||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  9056627 ggagtgtcgtataaggctgatgtttatagttttggtatgcttttgatggaaatggcaagcaagaggaaaaa 9056557  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 8964581 - 8964508
Alignment:
Q  15 gggggagtgtcctataaagccgatgtttatagttttgggatgcttttgatggagatggcaagcaagaggaaaaa 88  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| | || ||||||||    
T  8964581 gggggagtgtcctataaggctgatgtttatagctttgggatgcttttgatggagatggcaggtaaaaggaaaaa 8964508  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 9105032 - 9105105
Alignment:
Q  15 gggggagtgtcctataaagccgatgtttatagttttgggatgcttttgatggagatggcaagcaagaggaaaaa 88  Q
    |||||||| |||||||| || ||||||||||| ||||||||||||||||||||||||||| ||||||| |||||    
T  9105032 gggggagtttcctataaggctgatgtttatagctttgggatgcttttgatggagatggcaggcaagagaaaaaa 9105105  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 8874112 - 8874182
Alignment:
Q  18 ggagtgtcctataaagccgatgtttatagttttgggatgcttttgatggagatggcaagcaagaggaaaaa 88  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| | || ||||||||    
T  8874112 ggagtgtcctataaggctgatgtttatagttttgggatgcttttgatggtgatggcaggtaaaaggaaaaa 8874182  T

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Target: chr1; HSP #9
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 8999732 - 8999659
Alignment:
Q  15 gggggagtgtcctataaagccgatgtttatagttttgggatgcttttgatggagatggcaagcaagaggaaaaa 88  Q
    ||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||| | || ||||||||    
T  8999732 gggggagtgtcttataaggctgatgtttatagctttgggatgcttttgatggagatggcaggtaaaaggaaaaa 8999659  T

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Target: chr1; HSP #10
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 9098366 - 9098316
Alignment:
Q  38 tgtttatagttttgggatgcttttgatggagatggcaagcaagaggaaaaa 88  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  9098366 tgtttatagttttggtatgcttttgatggagatagcaagcaagaggaaaaa 9098316  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 11033235 - 11033190
Alignment:
Q  30 aaagccgatgtttatagttttgggatgcttttgatggagatggcaa 75  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||    
T  11033235 aaagctgatgtttatagttttgggatgttgttgatggagatggcaa 11033190  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 9318334 - 9318397
Alignment:
Q  18 ggagtgtcctataaagccgatgtttatagttttgggatgcttttgatggagatggcaagcaaga 81  Q
    ||||| ||||| || |||||||| ||||| ||||| |||||||||||||| |||||||| ||||    
T  9318334 ggagtatcctacaaggccgatgtatatagctttggaatgcttttgatggaaatggcaagtaaga 9318397  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 10979378 - 10979332
Alignment:
Q  30 aaagccgatgtttatagttttgggatgcttttgatggagatggcaag 76  Q
    ||||| ||||| ||||||||||||||| | |||||||||||||||||    
T  10979378 aaagctgatgtatatagttttgggatgttgttgatggagatggcaag 10979332  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 11010944 - 11010898
Alignment:
Q  30 aaagccgatgtttatagttttgggatgcttttgatggagatggcaag 76  Q
    ||||| ||||| ||||||||||||||| | |||||||||||||||||    
T  11010944 aaagctgatgtatatagttttgggatgttgttgatggagatggcaag 11010898  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 11007782 - 11007737
Alignment:
Q  30 aaagccgatgtttatagttttgggatgcttttgatggagatggcaa 75  Q
    ||||| ||||||||||||||||||||| | || |||||||||||||    
T  11007782 aaagctgatgtttatagttttgggatgttgttaatggagatggcaa 11007737  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 9234103 - 9234159
Alignment:
Q  18 ggagtgtcctataaagccgatgtttatagttttgggatgcttttgatggagatggca 74  Q
    |||||||| || ||||| ||||| || |||||||| |||||||||||||| ||||||    
T  9234103 ggagtgtcgtacaaagctgatgtatacagttttggaatgcttttgatggaaatggca 9234159  T

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Target: chr6 (Bit Score: 33; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 15927240 - 15927304
Alignment:
Q  18 ggagtgtcctataaagccgatgtttatagttttgggatgcttttgatggagatggcaagcaagag 82  Q
    ||||| || ||||| |||||||| ||||| ||||| |||||||||||||| |||||||| |||||    
T  15927240 ggagtttcgtataaggccgatgtatatagctttggaatgcttttgatggaaatggcaagtaagag 15927304  T

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Target: chr3 (Bit Score: 33; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 9159640 - 9159600
Alignment:
Q  36 gatgtttatagttttgggatgcttttgatggagatggcaag 76  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  9159640 gatgtttatagttttggaatgcttttgatggaaatggcaag 9159600  T

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