View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-68 (Length: 44)
Name: Solexa-NF5886-68
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-68 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 37; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 37704459 - 37704423
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcct |
44 |
Q |
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| T |
37704459 |
tttggtccttgccccttagtttcaggttatgtttcct |
37704423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 37437525 - 37437489
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcct |
44 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
37437525 |
tttggtccttgccccttagtttcaagttatgtttcct |
37437489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 37698641 - 37698605
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcct |
44 |
Q |
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|||||||||| |||| ||||||||||||||||||||| |
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| T |
37698641 |
tttggtcctttccccgtagtttcaggttatgtttcct |
37698605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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