View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-69 (Length: 64)
Name: Solexa-NF5886-69
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-69 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 60; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-26
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 14089341 - 14089400
Alignment:
| Q |
5 |
tttcctcgtctaagtctccatgcaagaaggctgtcttcacatctagttgttccagctcaa |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14089341 |
tttcctcgtctaagtctccatgcaagaaggctgtcttcacatctagttgttccagctcaa |
14089400 |
T |
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Target: chr2 (Bit Score: 60; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-26
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 33697354 - 33697295
Alignment:
| Q |
5 |
tttcctcgtctaagtctccatgcaagaaggctgtcttcacatctagttgttccagctcaa |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33697354 |
tttcctcgtctaagtctccatgcaagaaggctgtcttcacatctagttgttccagctcaa |
33697295 |
T |
|
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Target: chr5 (Bit Score: 56; Significance: 5e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-24
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 9359082 - 9359141
Alignment:
| Q |
5 |
tttcctcgtctaagtctccatgcaagaaggctgtcttcacatctagttgttccagctcaa |
64 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9359082 |
tttcctcgtctaagtctccatgcaagaaggttgtcttcacatctagttgttccagctcaa |
9359141 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-24
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 46457145 - 46457086
Alignment:
| Q |
5 |
tttcctcgtctaagtctccatgcaagaaggctgtcttcacatctagttgttccagctcaa |
64 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46457145 |
tttcctcgtctaagtctccatgcaagaaggttgtcttcacatctagttgttccagctcaa |
46457086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-22
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 9952440 - 9952384
Alignment:
| Q |
5 |
tttcctcgtctaagtctccatgcaagaaggctgtcttcacatctagttgttccagct |
61 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9952440 |
tttcctcgtctaagtctccatgctagaaggctgtcttcacatctagttgttccagct |
9952384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-21
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 24878071 - 24878130
Alignment:
| Q |
5 |
tttcctcgtctaagtctccatgcaagaaggctgtcttcacatctagttgttccagctcaa |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
24878071 |
tttcctcgtctaagtctccatgcaagaaggttatcttcacatctagttgttccagctcaa |
24878130 |
T |
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