View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5886-73 (Length: 82)

Name: Solexa-NF5886-73
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5886-73
Solexa-NF5886-73
[»] chr3 (12 HSPs)
chr3 (1-82)||(49486704-49486785)
chr3 (4-82)||(21473202-21473280)
chr3 (1-82)||(49491201-49491282)
chr3 (1-82)||(21453258-21453339)
chr3 (1-82)||(21458432-21458513)
chr3 (4-82)||(15752482-15752560)
chr3 (4-82)||(15758275-15758353)
chr3 (7-82)||(21477589-21477664)
chr3 (6-82)||(21883522-21883598)
chr3 (8-82)||(21877262-21877336)
chr3 (10-82)||(2978225-2978296)
chr3 (10-82)||(2982169-2982240)
[»] scaffold0014 (2 HSPs)
scaffold0014 (4-82)||(111973-112051)
scaffold0014 (4-42)||(106130-106168)
[»] chr2 (8 HSPs)
chr2 (4-82)||(43293121-43293199)
chr2 (7-82)||(43287379-43287454)
chr2 (4-82)||(24056607-24056685)
chr2 (4-82)||(25445044-25445120)
chr2 (4-82)||(19437522-19437598)
chr2 (4-82)||(19443097-19443173)
chr2 (4-82)||(24053272-24053349)
chr2 (17-82)||(25454715-25454778)
[»] chr4 (16 HSPs)
chr4 (5-82)||(1913717-1913794)
chr4 (6-82)||(12659176-12659252)
chr4 (4-82)||(16325701-16325779)
chr4 (4-82)||(16334745-16334823)
chr4 (4-56)||(12665692-12665744)
chr4 (4-82)||(1873977-1874053)
chr4 (4-82)||(25697311-25697387)
chr4 (4-82)||(30679777-30679853)
chr4 (19-82)||(910847-910908)
chr4 (4-82)||(23188061-23188137)
chr4 (4-82)||(25687543-25687619)
chr4 (4-82)||(30673684-30673760)
chr4 (4-82)||(23200624-23200700)
chr4 (4-42)||(12428868-12428906)
chr4 (4-42)||(12439277-12439315)
chr4 (6-82)||(18890100-18890175)
[»] chr1 (13 HSPs)
chr1 (4-82)||(35625235-35625313)
chr1 (4-82)||(27347150-27347228)
chr1 (4-82)||(37365134-37365212)
chr1 (4-82)||(38736137-38736215)
chr1 (4-82)||(11654118-11654194)
chr1 (4-82)||(11660275-11660351)
chr1 (4-82)||(37356716-37356794)
chr1 (4-82)||(18540690-18540766)
chr1 (4-82)||(31092932-31093008)
chr1 (4-82)||(18534964-18535040)
chr1 (4-82)||(31099538-31099614)
chr1 (4-46)||(39492872-39492914)
chr1 (6-82)||(7876189-7876262)
[»] chr5 (9 HSPs)
chr5 (4-82)||(35264525-35264601)
chr5 (4-82)||(35270266-35270342)
chr5 (4-82)||(23053364-23053440)
chr5 (4-82)||(23058939-23059015)
chr5 (4-82)||(39653912-39653988)
chr5 (6-82)||(25365378-25365455)
chr5 (4-82)||(21178032-21178109)
chr5 (28-82)||(16675659-16675711)
chr5 (28-82)||(21171196-21171248)
[»] scaffold0102 (1 HSPs)
scaffold0102 (4-82)||(14123-14199)
[»] chr8 (5 HSPs)
chr8 (6-82)||(30714202-30714276)
chr8 (6-82)||(30721979-30722053)
chr8 (6-80)||(30727587-30727659)
chr8 (30-82)||(37204332-37204382)
chr8 (30-82)||(37209809-37209859)
[»] chr7 (7 HSPs)
chr7 (6-82)||(340278-340354)
chr7 (4-82)||(29176642-29176718)
chr7 (4-82)||(29185621-29185697)
chr7 (13-82)||(346519-346588)
chr7 (30-82)||(22822634-22822684)
chr7 (30-82)||(22826937-22826987)
chr7 (1-82)||(25830370-25830450)
[»] scaffold0079 (1 HSPs)
scaffold0079 (4-82)||(58037-58115)
[»] chr6 (2 HSPs)
chr6 (6-82)||(33660877-33660954)
chr6 (4-82)||(18738671-18738747)
[»] scaffold0591 (1 HSPs)
scaffold0591 (6-82)||(9421-9496)
[»] scaffold0258 (1 HSPs)
scaffold0258 (4-47)||(6263-6306)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 5e-37; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-37
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 49486704 - 49486785
Alignment:
Q  1 gagaggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49486704 gagaggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttat 49486785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-35
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 21473280 - 21473202
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21473280 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttat 21473202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 49491201 - 49491282
Alignment:
Q  1 gagaggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49491201 gagaggagaagaagagagaatatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttat 49491282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 8e-30
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 21453339 - 21453258
Alignment:
Q  1 gagaggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  21453339 gagagaaggagaagagagaataggagcagtattcttattcactgatgtgtgtatcccaatgttacaaatgagctctatttat 21453258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 8e-30
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 21458513 - 21458432
Alignment:
Q  1 gagaggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  21458513 gagagaaggagaagagagaataggagcagtattcttattcactgatgtgtgtatcccaatgttacaaatgagctctatttat 21458432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 15752482 - 15752560
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  15752482 aggagaagaagagagaattagagcagtattcttattcactaatgtgtgtatctcaatgttacaaatgagctctatttat 15752560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 15758275 - 15758353
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  15758275 aggagaagaagagagaattagagcagtattcttattcactaatgtgtgtatctcaatgttacaaatgagctctatttat 15758353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 21477664 - 21477589
Alignment:
Q  7 agaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||||||    
T  21477664 agaagaagagagaataggagcagtattcttatttaccgatgtgtgtatctcaatgttacaaatgagccctatttat 21477589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 21883598 - 21883522
Alignment:
Q  6 gagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||    
T  21883598 gagaagaagagagaataggagaaatattcctattcactgatgtgtgtatcccaatgttacaaatgagctctatttat 21883522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 7e-21
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 21877336 - 21877262
Alignment:
Q  8 gaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  21877336 gaagaagagagaataggagaaatattcctattcactgatgtgtgtatcccaatgttacaaatgagctccatttat 21877262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 2978225 - 2978296
Alignment:
Q  10 agaagagagaata-ggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||| |||| | ||||||||||||||||||||| ||||  |||||||||||||| ||||||||||    
T  2978225 agaagagagaataaggagaaatattcttattcactgatgtgtatatc--aatgttacaaatgagctctatttat 2978296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 2982169 - 2982240
Alignment:
Q  10 agaagagagaat-aggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||| ||||| | |||||||||||||| |||||| ||||  |||||||||||||| ||||||||||    
T  2982169 agaagagagaattaggagaaatattcttattcacttatgtgtatatc--aatgttacaaatgagctctatttat 2982240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 75; Significance: 3e-35; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 75; E-Value: 3e-35
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 112051 - 111973
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  112051 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgaactctatttat 111973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 106168 - 106130
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcac 42  Q
    |||||||||||||||||||||||||||||||||||||||    
T  106168 aggagaagaagagagaataggagcagtattcttattcac 106130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 8e-33; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-33
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 43293121 - 43293199
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  43293121 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatcccaatgttacaaatgagctctatttat 43293199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-31
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 43287379 - 43287454
Alignment:
Q  7 agaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  43287379 agaagaagagagaataggagcagtattcttattcactaatgtgtgtatctcaatgttacaaatgagctctatttat 43287454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 24056607 - 24056685
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  24056607 aggagaagaaaagagaatagaagcagtattcttattcactaatgtgtgtatctcaatgttacaaatgagctctatttat 24056685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 25445044 - 25445120
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  25445044 aggagaagaagagagaataggaggagtattcttattcactgatgtgtgta--tcaatgttacaaatgagctctatttat 25445120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 7e-24
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 19437522 - 19437598
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||  |||||||||||||||||| ||||||||||    
T  19437522 aggagaagaagagagaataagagcagtattcttattcactaatgtgtg--tctcaatgttacaaatgagctctatttat 19437598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 7e-24
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 19443097 - 19443173
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||  |||||||||||||||||| ||||||||||    
T  19443097 aggagaagaagagagaataagagcagtattcttattcactaatgtgtg--tctcaatgttacaaatgagctctatttat 19443173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 7e-21
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 24053272 - 24053349
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||| |||||||||| ||||||||||    
T  24053272 aggagaagaaaagagaataggagca-tattcttattcactaatgtatgtatctcaatattacaaatgagctctatttat 24053349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 25454715 - 25454778
Alignment:
Q  17 agaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||||||||||| ||||||||||    
T  25454715 agaataggagcagtattcttattcaatgatgtgtgta--tcaatgttacaaatgagctctatttat 25454778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-32; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-32
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 1913717 - 1913794
Alignment:
Q  5 ggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1913717 ggagaagaagagagaatatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttat 1913794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-27
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 12659176 - 12659252
Alignment:
Q  6 gagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||    
T  12659176 gagaagaagagagaatatgagcagtattcttattcactaatgtgtgtatctcagtgttacaaatgagctctatttat 12659252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 16325701 - 16325779
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||||||||| || |||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  16325701 aggagaagaagagagaataggaacaatattcttattcaataatgtgtgtatctcaatgttacaaatgagctctatttat 16325779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 16334745 - 16334823
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||| ||||||| || |||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  16334745 aggagaagaagagataataggaacaatattcttattcaataatgtgtgtatctcaatgttacaaatgagctctatttat 16334823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 12665692 - 12665744
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatct 56  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12665692 aggagaagaagagagaataggagcagtattcttattcactaatgtgtgtatct 12665744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 1873977 - 1874053
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||| ||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||| || |||||||    
T  1873977 aggagaagaggagagaataggaaaagtattcttattcactga--tgtgtatctcaatgttacaaatgagctatatttat 1874053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 25697311 - 25697387
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||| |||||||||||||||||||||||||||  | | ||| |||||||||||||||| ||||||||||    
T  25697311 aggagaagaagagaaaataggagcagtattcttattcactga--tctatatatcaatgttacaaatgagctctatttat 25697387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 30679777 - 30679853
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||| |||||||||||||||||||| |||| | ||  |||||||||||||||| ||||||||||    
T  30679777 aggagaagaagagagaataagagcagtattcttattcactaatgtattta--tcaatgttacaaatgagctctatttat 30679853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 910847 - 910908
Alignment:
Q  19 aataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||||||||||||||| ||||||  |||||||||||||||| ||||||||||    
T  910847 aataggagcagtattcttattcactgatctgtgta--tcaatgttacaaatgagctctatttat 910908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 23188137 - 23188061
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||| |||||||||| ||||||||||||||||| || ||| ||  |||||||||||||||| ||||||||||    
T  23188137 aggagaagaagtgagaataggaacagtattcttattcacttatctgtcta--tcaatgttacaaatgagctctatttat 23188061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 25687543 - 25687619
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||| |||||||||||||||||||||||||||  | | ||| |||||||||||||||| |||| |||||    
T  25687543 aggagaagaagagaaaataggagcagtattcttattcactga--tctatatatcaatgttacaaatgagctctgtttat 25687619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 30673684 - 30673760
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||| |||||||||| |||||||||||||||||||| |||| | ||  |||||||||||||||| ||||||||||    
T  30673684 aggagaaggagagagaataagagcagtattcttattcactaatgtattta--tcaatgttacaaatgaactctatttat 30673760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 23200700 - 23200624
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||||||||| |||||||| ||||| ||||| ||| ||  ||||||||||||||||  |||||||||    
T  23200700 aggagaagaagagagaataggaacagtattcgtattcgctgatctgtcta--tcaatgttacaaatgagttctatttat 23200624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 12428868 - 12428906
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcac 42  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12428868 aggagaagaagagagaataggagcagtattcttattcac 12428906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 12439277 - 12439315
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcac 42  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  12439277 aggagaagaagagagaatatgagcagtattcttattcac 12439315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 18890175 - 18890100
Alignment:
Q  6 gagaagaagagagaata-ggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||| |||| | |||||||||||||| |||||| ||||  ||||||||||||||  |||||||||    
T  18890175 gagaagaagagagaataaggagaaatattcttattcactaatgtgtatatc--aatgttacaaatgagttctatttat 18890100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-30
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 35625235 - 35625313
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  35625235 aggagaagaagagagaataggagcagtattcttattcaataatgtgtgtatctcaatgttacaaatgagctctatttat 35625313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 27347150 - 27347228
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27347150 aggagaagaagagagaataagagatgtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttat 27347228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 37365134 - 37365212
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  37365134 aggagaagaagagagaataggaacagtattcttattcaataatgtgtgtatctcaatgttacaaatgagctctatttat 37365212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 38736215 - 38736137
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  38736215 aggagaagaagagagaatatgagcagtattattattcactgatgtatgtatctgaatgttacaaatgaactctatttat 38736137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 7e-24
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 11654194 - 11654118
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||||||||    
T  11654194 aggagaagaagagagaataggagcagtattcttattcattga--tgtgtatatcaatgttacaaatgaactctatttat 11654118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 7e-24
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 11660351 - 11660275
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||| |||||||||||||||||||||||  |||||| |||||||||||||||| ||||||||||    
T  11660351 aggagaagaagagagaatatgagcagtattcttattcactgat--gtgtatatcaatgttacaaatgagctctatttat 11660275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 37356716 - 37356794
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||||||||| | ||||||||||||| | |||||||||||||||||||| |||||| ||||||||||    
T  37356716 aggagaagaagagagaataggaacggtattcttattcaataatgtgtgtatctcaatgttataaatgagctctatttat 37356794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 18540690 - 18540766
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||| |||||||||||||||||||||||||||  | ||||| |||||||||||||||| ||||||||||    
T  18540690 aggagaagaagagaaaataggagcagtattcttattcactga--tctgtatatcaatgttacaaatgagctctatttat 18540766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 31092932 - 31093008
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||| ||| |||||||||||||||| ||||||||||    
T  31092932 aggagaagaagagagaataggagcagtatttttattcactga--tgtatatatcaatgttacaaatgagctctatttat 31093008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 18534964 - 18535040
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||| ||| |||||||||||||||||||||||  | ||||| |||||||||||||||| ||||||||||    
T  18534964 aggagaagaagagaaaatcggagcagtattcttattcactga--tctgtatatcaatgttacaaatgagctctatttat 18535040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 31099538 - 31099614
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||| |||||||||| |||||||||||  ||| ||| |||||||||||||||| ||||||||||    
T  31099538 aggagaagaagagagaataagagcagtatttttattcactga--tgtatatatcaatgttacaaatgagctctatttat 31099614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 39492914 - 39492872
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgat 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  39492914 aggagaagaagagagaatatgagcagtattcttattcactgat 39492872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 7876262 - 7876189
Alignment:
Q  6 gagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||| | | | |||||||||||||| ||||||  ||||||||||||||||||| ||||||||||    
T  7876262 gagaagaagagagaataag-gaaatattcttattcactaatgtgt--atctcaatgttacaaatgagctctatttat 7876189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-28; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 35264525 - 35264601
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  35264525 aggagaagaagagagaataggagcagtattcttattcactga--tgtgtatctcaatgttacaaatgagctctatttat 35264601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 35270266 - 35270342
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  35270266 aggagaagaagagagaataggagcagtattcttattcactga--tgtgtatctcaatgttacaaatgagctctatttat 35270342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-24
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 23053364 - 23053440
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||  |||||||||||||||||| ||||||||||    
T  23053364 aggagaagaagagagaataagagcagtattcttattcactaatgtgtg--tctcaatgttacaaatgagctctatttat 23053440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 7e-24
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 23058939 - 23059015
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||  |||||||||||||||||| ||||||||||    
T  23058939 aggagaagaagagagaataagagcagtattcttattcactaatgtgtg--tctcaatgttacaaatgagctctatttat 23059015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 39653912 - 39653988
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||| ||||||||||||||||||||||  ||||||| ||||||||| |||||| ||||||||||    
T  39653912 aggagaagaagagagaataagagcagtattcttattcactga--tgtgtatatcaatgttataaatgagctctatttat 39653988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 25365378 - 25365455
Alignment:
Q  6 gagaagaagagagaata-ggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||| |||| | |||||||||||||| |||||||| |  ||||||||||||||| ||||||||||    
T  25365378 gagaagaagagagaataaggagaaatattcttattcactaatgtgtgttttacaatgttacaaatgagctctatttat 25365455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 21178032 - 21178109
Alignment:
Q  4 aggagaagaagagagaatag-gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||| | ||| ||  |||||||||||||||| |||||  |||||||||||||||||||| ||||||||||    
T  21178032 aggagaagaagagatactagagaaaagtattcttattcacttatgtg--tatctcaatgttacaaatgagctctatttat 21178109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 16675711 - 16675659
Alignment:
Q  28 agtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||| ||||||  ||||||||||||||||||| ||||||||||    
T  16675711 agtattcttattcacttatgtgt--atctcaatgttacaaatgagctctatttat 16675659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 21171196 - 21171248
Alignment:
Q  28 agtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||| |||||  |||||||||||||||||||| ||||||||||    
T  21171196 agtattcttattcacttatgtg--tatctcaatgttacaaatgagctctatttat 21171248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 60; Significance: 3e-26; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 14199 - 14123
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||    
T  14199 aggagaagaagagagaataggagcagtattcttattcactgat--gtgtctctcaatgttacaaatgagctctatttat 14123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-25
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 30714202 - 30714276
Alignment:
Q  6 gagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||||||||||    
T  30714202 gagaagaagagagaataggagcagtattcttattcactga--tgtgtatatcaatgttacaaatgagctctatttat 30714276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-25
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 30721979 - 30722053
Alignment:
Q  6 gagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||||||||||    
T  30721979 gagaagaagagagaataggagcagtattcttattcactga--tgtgtatatcaatgttacaaatgagctctatttat 30722053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-24
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 30727587 - 30727659
Alignment:
Q  6 gagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctattt 80  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||||||||    
T  30727587 gagaagaagagagaataggagcagtattcttattcactga--tgtgtatatcaatgttacaaatgagctctattt 30727659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 37204382 - 37204332
Alignment:
Q  30 tattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  37204382 tattcttattcactgatgtgtgta--tcaatgttacaaatgagctctatttat 37204332  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 37209859 - 37209809
Alignment:
Q  30 tattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  37209859 tattcttattcactgatgtgtgta--tcaatgttacaaatgagctctatttat 37209809  T

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Target: chr7 (Bit Score: 57; Significance: 2e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 340278 - 340354
Alignment:
Q  6 gagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||    
T  340278 gagaagaagagagaataggagaaatattcctattcactgatgtgtgtatcccaatgttacaaatgagctctatttat 340354  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 29176718 - 29176642
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||||||  |||||||||||||||| ||||||||||    
T  29176718 aggagaagaagaaagaatagaagcagtattcttattcactaatgtgtgta--tcaatgttacaaatgagctctatttat 29176642  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 29185697 - 29185621
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||||||  |||||||||||||||| ||||||||||    
T  29185697 aggagaagaagaaagaatagaagcagtattcttattcactaatgtgtgta--tcaatgttacaaatgagctctatttat 29185621  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 346519 - 346588
Alignment:
Q  13 agagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||    
T  346519 agagagaataggagaaatattcctattcactgatgtgtgtatcccaatgttacaaatgagctctatttat 346588  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 22822684 - 22822634
Alignment:
Q  30 tattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  22822684 tattcttattcactgatgtgtgta--tcaatgttacaaatgagctctatttat 22822634  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 22826987 - 22826937
Alignment:
Q  30 tattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  22826987 tattcttattcactgatgtgtgta--tcaatgttacaaatgagctctatttat 22826937  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25830370 - 25830450
Alignment:
Q  1 gagaggagaagaagagagaata-ggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||| |||||||||||||||| |||| |||||||||||||||||  ||||||  ||||||| |||||| || ||||||||||    
T  25830370 gagagaagaagaagagagaataaggagaagtattcttattcactg--gtgtgtccctcaatgctacaaaggagctctatttat 25830450  T

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Target: scaffold0079 (Bit Score: 55; Significance: 3e-23; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 58115 - 58037
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||| ||||||| || |||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  58115 aggagaagaagagataataggaacaatattcttattcaataatgtgtgtatctcaatgttacaaatgagctctatttat 58037  T

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Target: chr6 (Bit Score: 54; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 33660877 - 33660954
Alignment:
Q  6 gagaagaagagagaata-ggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||| |||| | ||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  33660877 gagaagaagagagaataaggagaaatattcttattcaccgatgtgtgtatctcaatgttacaaatgaactctatttat 33660954  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 18738747 - 18738671
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    |||||||||||||| ||||||||||||||||||||| |||||   |||| |||||||||||||||||| ||||||||||    
T  18738747 aggagaagaagagaaaataggagcagtattcttatttactga--cgtgtctctcaatgttacaaatgagctctatttat 18738671  T

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Target: scaffold0591 (Bit Score: 53; Significance: 4e-22; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 9496 - 9421
Alignment:
Q  6 gagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgacctctatttat 82  Q
    ||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  9496 gagaagaagagagaataggagaaatattcttattca-tgatgtgtgtatcccaatgttacaaatgagctctatttat 9421  T

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Target: scaffold0258 (Bit Score: 40; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 6263 - 6306
Alignment:
Q  4 aggagaagaagagagaataggagcagtattcttattcactgatg 47  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  6263 aggagaagaagagagaataggagcaatattcttattcactgatg 6306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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