View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5886-74 (Length: 57)
Name: Solexa-NF5886-74
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-74 |
 | |
|
| [»] scaffold0329 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0329 (Bit Score: 47; Significance: 1e-18; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 19083 - 19033
Alignment:
| Q |
7 |
acgtgccatagcacaacttctttcctttcacaacttgtcctccaacgagat |
57 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19083 |
acgtgccatagcacaacttctgtcctttcacaacttgtcctccaacgagat |
19033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 1096251 - 1096205
Alignment:
| Q |
7 |
acgtgccatagcacaacttctttcctttcacaacttgtcctccaacg |
53 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1096251 |
acgtgccatagcacaacttctgtcctttcacaacttgtcctccaacg |
1096205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 31236559 - 31236602
Alignment:
| Q |
14 |
atagcacaacttctttcctttcacaacttgtcctccaacgagat |
57 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31236559 |
atagcacaacttctgtcctttcacaacttgtcctccaacgagat |
31236602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 19840405 - 19840355
Alignment:
| Q |
7 |
acgtgccatagcacaacttctttcctttcacaacttgtcctccaacgagat |
57 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
19840405 |
acgtgccatagcacaacttatgtcctttcataacttgtcctccaacgagat |
19840355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 9891030 - 9891075
Alignment:
| Q |
7 |
acgtgccatagcacaacttctttcctttcacaacttgtcctccaac |
52 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
9891030 |
acgtgccatagcacaacatctgtcctttcacaacttgtcctccaac |
9891075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 11831037 - 11830986
Alignment:
| Q |
7 |
acgtgccatagcacaacttctttcctttcacaactt-gtcctccaacgagat |
57 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
11831037 |
acgtgccatagcacaacttctgtcctttcacaacttggtcctgcaacgagat |
11830986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University