View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5886-9 (Length: 216)
Name: Solexa-NF5886-9
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5886-9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 21551390 - 21551266
Alignment:
| Q |
92 |
aaacaggtgaataaaacaacatactaagttgaaaaaacaatctttttagagaattatatttaaaggcataatgatacttgatattaacatcaagaaaaag |
191 |
Q |
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| T |
21551390 |
aaacaagtgaataaaacaacatactaagttgaaaaaacaatctttttagagaattatatttaaaggcataatgatacttgatattaacatcaagaaaaag |
21551291 |
T |
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| Q |
192 |
tttctgtcgtcgttacataaacttt |
216 |
Q |
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| T |
21551290 |
tttctgtcgtcgttacataaacttt |
21551266 |
T |
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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 3998779 - 3998734
Alignment:
| Q |
21 |
gatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaa |
66 |
Q |
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| T |
3998779 |
gatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaa |
3998734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 4007770 - 4007725
Alignment:
| Q |
21 |
gatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaa |
66 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
4007770 |
gatcatgtgtgcatgatacacgaccaacgatgttctcggtacctaa |
4007725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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