View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5887-1 (Length: 262)
Name: Solexa-NF5887-1
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5887-1 |
 | |
|
| [»] scaffold0057 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 61 - 252
Target Start/End: Original strand, 13729254 - 13729445
Alignment:
| Q |
61 |
atactcagtatactactccttatggtaatgaacagtatggtaactctggaggtagaggtggctatttcagaggcagaggacctcgtggtggtcgtcttag |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13729254 |
atactcagtatactactccttatggtaatgaacagtatggtaactctggaggtagaggtggctatttcagaggcagaggacctcgtggtggtcgtcttag |
13729353 |
T |
|
| Q |
161 |
aggccgtggtggtggacctcgtgcctacattcagtgtcagatatgtcacaaaactggacatgatgcttctatttgttaccatcgcctctctg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13729354 |
aggccgtggtggtggacctcgtgcctacattcagtgtcagatatgtcacaaaactggacatgatgcttctatttgttaccatcgcctctctg |
13729445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 61 - 252
Target Start/End: Complemental strand, 25231424 - 25231224
Alignment:
| Q |
61 |
atactcagtatactactccttatggtaatgaacagtatggtaactctggaggtagaggtggctatttcagaggcagaggacctcgtggtggtcgtcttag |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25231424 |
atactcagtatactactccttatggtaatgaacagtatggtaactctggaggtagaggtggctatttcagaggcagaggacctcgtggtggtcgttttag |
25231325 |
T |
|
| Q |
161 |
aggccgtg---------gtggtggacctcgtgcctacattcagtgtcagatatgtcacaaaactggacatgatgcttctatttgttaccatcgcctctct |
251 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25231324 |
aggccgtggtggccgtggtggtggacctcgtgcctacattcagtgtcagatatgtcacaaaactggacatgatgcttctatttgttaccatcgcctctct |
25231225 |
T |
|
| Q |
252 |
g |
252 |
Q |
| |
|
| |
|
|
| T |
25231224 |
g |
25231224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 45666838 - 45666895
Alignment:
| Q |
8 |
atcatgtgttggtcaagctactttcccttttttgctgtaaaaaagttatagtgatact |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45666838 |
atcatgtgttggtcaagctactttcccttttttgctgtaaaaaagttatagtgatact |
45666895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 252
Target Start/End: Complemental strand, 57355 - 57190
Alignment:
| Q |
93 |
cagtatggtaactctggaggtagaggtggctatttcagaggcagaggacctcgtggtggtcgtcttagaggccgtggtg---gtggacct---cgtgcct |
186 |
Q |
| |
|
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||| |||| | ||||| | |
|
|
| T |
57355 |
cagtatggtaattttggatgtagaggtggctatttcagaggcagaggacctcgtggtggccgtttcagaggccatggtggccgtggcagtggacgtgctt |
57256 |
T |
|
| Q |
187 |
acattcagtgtcagatatgtcacaaaactggacatgatgcttctatttgttaccatcgcctctctg |
252 |
Q |
| |
|
| ||||| ||||||||||| |||| || || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
57255 |
atattcaatgtcagatatgctacaagacagggcatgatgcttcattttgttaccatcgcctctctg |
57190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University