View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5887-11 (Length: 145)
Name: Solexa-NF5887-11
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5887-11 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 141; Significance: 3e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 4177783 - 4177639
Alignment:
| Q |
1 |
cccaacacttgttagaattaatcaatgagcagtgacataaatgttttagacaccttgtttagcaagtgttgtagacaaaaatattgtatcaaattatgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4177783 |
cccaacacttgttagaattaatcaatgagcagtgacataaatgttttagacaccttgtttagcaagtgttgtagacaaaaatattgtatcaaattatgta |
4177684 |
T |
|
| Q |
101 |
atattatgtctgggttttggaatttttgtgtgtatttcttctctc |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4177683 |
atattatgtctgggttttggaatttttgtgtctatttcttctctc |
4177639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 4078270 - 4078409
Alignment:
| Q |
1 |
cccaacacttgttagaattaatcaatgagcagtgacataaatgttttagacaccttgtttagcaagtgttgtagacaaaaatattgtatcaaatt-atgt |
99 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
4078270 |
cccaacacttgttacaattaatcaataagcagtgacagaaatgttttagacaccttgtttacctagtgttgtagacagaaatattgtatcaaattgatgt |
4078369 |
T |
|
| Q |
100 |
aatatta--tgtctgggttttggaatttttgtgtgtattt |
137 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
4078370 |
aatattatttgtttgggttttggaatttttgtgtgtattt |
4078409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University