View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5887-14 (Length: 141)
Name: Solexa-NF5887-14
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5887-14 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 4e-67; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 48066900 - 48066760
Alignment:
| Q |
1 |
tgagaagaagtggtatagtacagagaaaattcaaggccaggaaaactatactattcctgatgccatgctgaaatttgccaaagaaaatggcatttctgtc |
100 |
Q |
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| T |
48066900 |
tgagatgaagtggtatagtacagagaaaattcaaggccaggaaaactatactattcctgatgccatgctgaaatttgccaaagaaaatggcatttctgtc |
48066801 |
T |
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| Q |
101 |
agaggtcatgccattttgtgtaacgatgaaagatttcagcc |
141 |
Q |
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| T |
48066800 |
agaggtcatgccattttgtgggacgatgaaagatttcagcc |
48066760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 7e-41
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 48099845 - 48099705
Alignment:
| Q |
1 |
tgagaagaagtggtatagtacagagaaaattcaaggccaggaaaactatactattcctgatgccatgctgaaatttgccaaagaaaatggcatttctgtc |
100 |
Q |
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| T |
48099845 |
tgagatgaagtggtatagtacagagagatttcaaggccaggaaaactatactatcccagatgccatgatgaaattcgccaaagaaaatggcatttctgtc |
48099746 |
T |
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| Q |
101 |
agaggtcatgccattttgtgtaacgatgaaagatttcagcc |
141 |
Q |
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| T |
48099745 |
agaggtcataccgttttctgggacgatgaaacttttcagcc |
48099705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 48062810 - 48062692
Alignment:
| Q |
2 |
gagaagaagtggtatagtacagagaaaattcaaggccaggaaaactatactattcctgatgccatgctgaaatttgccaaagaaaatggcatttctgtca |
101 |
Q |
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| T |
48062810 |
gagatgaagtggtatagtacagagaaaatccaaggccatgaaaactatactatcccagatgccatgctgaaatttgctaaggaaaatggcatatctgtca |
48062711 |
T |
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| Q |
102 |
gaggtcatgccattttgtg |
120 |
Q |
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| T |
48062710 |
gaggtcataacattttgtg |
48062692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 48106436 - 48106316
Alignment:
| Q |
11 |
tggtatagtacagagaaaattcaaggccaggaaaactatactattcctgatgccatgctgaaatttgccaaagaaaatggcatttctgtcagaggtcatg |
110 |
Q |
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| T |
48106436 |
tggtatagtacagaaataattccaggccaagaaaactacactatctcagatgcaatgttagaatttgctaaagataatggaatttctgtcagaggtcata |
48106337 |
T |
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| Q |
111 |
ccattttgtgtaacgatgaaa |
131 |
Q |
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| T |
48106336 |
acattttctgggacgatgaaa |
48106316 |
T |
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