View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5887-20 (Length: 137)
Name: Solexa-NF5887-20
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5887-20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 9e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 4093800 - 4093665
Alignment:
| Q |
2 |
tttattcatggcactgccagattgtttttacttcatccataacctttccctagtcacaagagcagtacacagtataagatttgtcacaaacattcttcac |
101 |
Q |
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| T |
4093800 |
tttattcatggcaatgccagattgtttttacttcatccataacctttccctagtcacaagagcagtacacagtagaagatttgtcacaaaaagtcttcac |
4093701 |
T |
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| Q |
102 |
tcacaaaaaagttcttataaacttttgattaataat |
137 |
Q |
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| T |
4093700 |
tcacaaaaaagttcttataaacttttgattaataat |
4093665 |
T |
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