View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5887-22 (Length: 135)
Name: Solexa-NF5887-22
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5887-22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 43; Significance: 7e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 978853 - 978925
Alignment:
| Q |
4 |
gagaagaatatagagaaagacgaaatctagaagaaacc---aaggtttatgtaggggaacagacaaaagcaca |
73 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| ||||||| ||||||| |||||||||||||||| |
|
|
| T |
978853 |
gagaagaatatagagaaaaatgaaatctagaagaaaccaagaaggtttctgtagggtaacagacaaaagcaca |
978925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 979567 - 979533
Alignment:
| Q |
97 |
tataagacgagtaatcctatattttgttcagagaa |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
979567 |
tataagacgagtaatcctatattttgttcagagaa |
979533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 128
Target Start/End: Complemental strand, 17914058 - 17914027
Alignment:
| Q |
97 |
tataagacgagtaatcctatattttgttcaga |
128 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
17914058 |
tataagacgagtaatcctatattttattcaga |
17914027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University