View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5887-24 (Length: 135)
Name: Solexa-NF5887-24
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5887-24 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 46954599 - 46954725
Alignment:
| Q |
7 |
tataaactggcactcttacgaataactcccccaaaacctgcgcaaattggagttcttaaacagctcccatccacgttaaggatatggcagtgatgattat |
106 |
Q |
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| T |
46954599 |
tataaaccggcactgttacgaataactcccccaaaacctgcgcgaattggagttcttaaacagctcccatccacgttaaggatatggcagtgatgattat |
46954698 |
T |
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| Q |
107 |
tactgttccattttaccatacgatcag |
133 |
Q |
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| T |
46954699 |
tactgttccatttgaccatacgatcag |
46954725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 8e-56
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 46954475 - 46954600
Alignment:
| Q |
1 |
gagaggtataaactggcactcttacgaataactcccccaaaacctgcgcaaattggagttcttaaacagctcccatccacgttaaggatatggcagtgat |
100 |
Q |
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||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46954475 |
gagaggtataaaccggcactgttacgaataactcccccaaaacctgcgcgaattggagttcttaaacagctcccatccacgttaaggatatggcagtgat |
46954574 |
T |
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| Q |
101 |
gattattactgttccattttaccata |
126 |
Q |
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| T |
46954575 |
gattattactgttccatttgaccata |
46954600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 6e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 6e-41
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 50234841 - 50234973
Alignment:
| Q |
1 |
gagaggtataaactggcactcttacgaataactcccccaaaacctgcgcaaattggagttcttaaacagctcccatccacgttaaggatatggcagtgat |
100 |
Q |
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||||||||||| | |||||| |||||||||||||||||||| ||||| | ||||||||||| | |||| ||||||||||| ||||||||||||||||||| |
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| T |
50234841 |
gagaggtataagccggcactgttacgaataactcccccaaagcctgcacgaattggagttcatgaacaactcccatccacattaaggatatggcagtgat |
50234940 |
T |
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| Q |
101 |
gattattactgttccattttaccatacgatcag |
133 |
Q |
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| T |
50234941 |
gattattgctgttccatttgaccatacgatcag |
50234973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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