View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5887-25 (Length: 134)
Name: Solexa-NF5887-25
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5887-25 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 103; Significance: 1e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 40322390 - 40322528
Alignment:
| Q |
1 |
cagagagaaggtaaaggtgaataattagggttaaggtgaatgataaggcaacaacagttctgcgcata-----gttcgattttggtaaaattttgcagaa |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40322390 |
cagagagaaggtaaaggtgaataattagggttaaggtgaatgataatgcagcaacagttatgcgcatattaaagttcgattttggtaaaattttgcagaa |
40322489 |
T |
|
| Q |
96 |
atcccaccccaaatttgtggatctgggttggtctaagtt |
134 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40322490 |
attccaccccaaatttgtggatctgggttggtctaagtt |
40322528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 1e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 9071340 - 9071202
Alignment:
| Q |
1 |
cagagagaaggtaaaggtgaataattagggttaaggtgaatgataaggcaacaacagttctgcgcata-----gttcgattttggtaaaattttgcagaa |
95 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
9071340 |
cagagaaaaggtaaaggtgaataattagggttaaggtgaatgataaggcagcgacagttctgaacatattaaagttcgattttggtaaaattttgcagaa |
9071241 |
T |
|
| Q |
96 |
atcccaccccaaatttgtggatctgggttggtctaagtt |
134 |
Q |
| |
|
|||||||||||||||||| | | ||||||||| |||||| |
|
|
| T |
9071240 |
atcccaccccaaatttgtaggtatgggttggtgtaagtt |
9071202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 28223146 - 28223212
Alignment:
| Q |
68 |
agttcgattttggtaaaattttgcagaaatcccaccccaaatttgtggatctgggttggtctaagtt |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | |||||| |
|
|
| T |
28223146 |
agttcgattttggtaaaattttgcagaaatcccacctcaaatttctggatctgggttgctttaagtt |
28223212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 6e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 45518846 - 45518715
Alignment:
| Q |
8 |
aaggtaaaggtgaataattagggttaaggtgaatgataaggcaacaacagttctgcgcatagt-----tcgattttggtaaaattttgcagaaatcccac |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||||||||| |||| |
|
|
| T |
45518846 |
aaggtaaaggtgaataattagggttaaggtgaatgataaggcagtgacagttctgaacatattaaaattcgattttggtaaaattttgcagaaattccac |
45518747 |
T |
|
| Q |
103 |
cccaaatttgtggatctgggttggtctaagtt |
134 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |
|
|
| T |
45518746 |
cccaaatttgtggatccgggttggtctaagtt |
45518715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University