View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5887-26 (Length: 134)
Name: Solexa-NF5887-26
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5887-26 |
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| [»] chr3 (5 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 2e-65; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 11614789 - 11614656
Alignment:
| Q |
1 |
gagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagcatcttatttttgaatgaaatgttgacaccaagaatttttgtgaat |
100 |
Q |
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| T |
11614789 |
gagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatctatcatcttatttttgaatgaaatgttgacaccaagaatttttgtgaat |
11614690 |
T |
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| Q |
101 |
tgtgatatctgtgatgcagtgactcctttagctt |
134 |
Q |
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| T |
11614689 |
tgtgatatctgtgatgcagtgactcctttagctt |
11614656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 13765398 - 13765278
Alignment:
| Q |
3 |
gatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagcatc----ttatttttgaatgaaatgttgacaccaagaatttttgtga |
98 |
Q |
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| T |
13765398 |
gatgaaactctcatctggtatatagtgtatcaaaaaataaatgttaatctagcaccctctttatgtatgaatgaaatgttggctctgagaatttttgtgc |
13765299 |
T |
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| Q |
99 |
attgtgatatctgtgatgcag |
119 |
Q |
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| T |
13765298 |
atggtgatatgtgtgatgcag |
13765278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 11606503 - 11606575
Alignment:
| Q |
62 |
tttttgaatgaaatgttgacaccaagaatttttgtgaattgtgatatctgtgatgcagtgactcctttagctt |
134 |
Q |
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| T |
11606503 |
tttttgaatgaaatgttggcactaatgatttttgtgcatggtgatatgtgtgatgcagttagtcctttagctt |
11606575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 13751995 - 13751888
Alignment:
| Q |
3 |
gatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagcatc----ttatttttgaatgaaatgttgacaccaagaatttttgtga |
98 |
Q |
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| T |
13751995 |
gatgaaactctcatctggtatatagtgtatcaaaaaataaatgttaatctagcaccctctttatgtatgaatgaaatgttggctctgagaatttttgtgc |
13751896 |
T |
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| Q |
99 |
attgtgat |
106 |
Q |
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| T |
13751895 |
atggtgat |
13751888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 13738566 - 13738513
Alignment:
| Q |
3 |
gatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagca |
56 |
Q |
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| T |
13738566 |
gatgaaactctcatctggtatatagtgtatcaaaaagtaaatgtcaatctagca |
13738513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 35080260 - 35080376
Alignment:
| Q |
18 |
tggtgtatagtgtatcaaaaagtaaatgttaatcaagcatcttatttttgaatgaaatgttgacaccaagaatttttgtgaattgtgatatctgtgatgc |
117 |
Q |
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|||||||||| |||||||| |||||||||||||| |||| | | |||||||||||||||||| || || ||||||||| || |||||||||||||||| |
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| T |
35080260 |
tggtgtatagcgtatcaaacagtaaatgttaatctagcaccctctttttgaatgaaatgttggtactgaggatttttgtggatggtgatatctgtgatgc |
35080359 |
T |
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| Q |
118 |
agtgactcctttagctt |
134 |
Q |
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| T |
35080360 |
agtgagtcctttagctt |
35080376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15607189 - 15607238
Alignment:
| Q |
1 |
gagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat |
50 |
Q |
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| T |
15607189 |
gagatgaaactcttatctactatatagtgtatcaaaaagtaaatgttaat |
15607238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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