View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5887-27 (Length: 132)
Name: Solexa-NF5887-27
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5887-27 |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 2e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 48066478 - 48066597
Alignment:
| Q |
10 |
ttcctgatataattgggtgggctggcaacttggtctggactgaattcaatggtgttaaactcattcataaacatgctggtgttcggatcaagatagtacg |
109 |
Q |
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| T |
48066478 |
ttcctgatataattgggtgggctggcaacttggtctggactgaattcaatggtgttaaattcattcataaacatgctggtgttcggatcaagatagtacg |
48066577 |
T |
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| Q |
110 |
ctgttgaataatatactgca |
129 |
Q |
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| T |
48066578 |
ctgttgaataatatactgca |
48066597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 48099423 - 48099537
Alignment:
| Q |
10 |
ttcctgatataattgggtgggctggcaacttggtctggactgaattcaatggtgttaaactcattcataaacatgctggtgttcggatcaagatagtacg |
109 |
Q |
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| T |
48099423 |
ttcctgatataattaggtgggctgactacccgatctccacttgattcaatggtgttaaactcattcatgaacattttgatttctggatcaagatggtaag |
48099522 |
T |
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| Q |
110 |
ctgttgaataatata |
124 |
Q |
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| T |
48099523 |
ctgttgaataatata |
48099537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 4e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 50231118 - 50231237
Alignment:
| Q |
10 |
ttcctgatataattgggtgggctggcaacttggtctggactgaattcaatggtgttaaactcattcataaacatgctggtgttcggatcaagatagtacg |
109 |
Q |
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| T |
50231118 |
ttcctgatataattggctgggctggcaacttggtcttgactgaattcaatggtgttaaacacgttcataaacatgctggtgttcgaatcaagatagtaag |
50231217 |
T |
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| Q |
110 |
ctgttgaataatatactgca |
129 |
Q |
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| T |
50231218 |
ctgttaaataatatactgca |
50231237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 55; Significance: 5e-23; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 1096 - 1023
Alignment:
| Q |
10 |
ttcctgatataattgggtgggctggcaacttggtctggactgaattcaatggtgttaaactcattcataaacatg |
84 |
Q |
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||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
1096 |
ttcctgatataat-ggctgggctggcaacttggtgtggactgaattcaatggtgttaaacacattcataaacatg |
1023 |
T |
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