View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5887-31 (Length: 127)
Name: Solexa-NF5887-31
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5887-31 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 7454030 - 7454149
Alignment:
| Q |
8 |
caaccaacaacaagttgaacgccgataatgatggaccctcatatcatgcagcatcaacttttggcatatgttcgttacacacttctgctgactctgagtt |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7454030 |
caaccaacaacaagttgaacgcccataatgatggaccctcatatcatgcagcatcaacttttggcatatgttcgttacacacttctgctgactctgagtt |
7454129 |
T |
|
| Q |
108 |
ggtattgcttggcctttaag |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7454130 |
ggtattgcttggcctttaag |
7454149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University