View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5887-33 (Length: 127)
Name: Solexa-NF5887-33
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5887-33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 51739387 - 51739506
Alignment:
| Q |
8 |
ccaatgtcacatattcgatgcataaaagaaacattctttcctgccaattccatgaattactacgaagttgtgagcttcttttgtcgaataaatttcatgt |
107 |
Q |
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| T |
51739387 |
ccaatgtcacatattcgatgcataaaagaaacattctttcctgccaattccatgaattactacgaagttgtgagcttcttttgtcgaataaatttcatgt |
51739486 |
T |
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| Q |
108 |
ttttatttggcttagagatg |
127 |
Q |
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| T |
51739487 |
ttttatttggcttagagatg |
51739506 |
T |
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Target: chr4 (Bit Score: 65; Significance: 5e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 10200077 - 10200189
Alignment:
| Q |
8 |
ccaatgtcacatattcgatgcataaaagaaacattctttcctgccaattccatgaattactacgaagttgtgagcttcttttgtcgaataaatttcatgt |
107 |
Q |
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|||||||| ||||||| || |||||||| ||||||||||| |||| |||||| |||||||| |||| ||||||||||||||||| ||||||||||||| |
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| T |
10200077 |
ccaatgtctcatattccatatataaaagagacattctttccagccagttccataaattactatcaagtagtgagcttcttttgtcgcataaatttcatgt |
10200176 |
T |
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| Q |
108 |
ttttatttggctt |
120 |
Q |
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| T |
10200177 |
ttttatttggctt |
10200189 |
T |
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