View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5887-37 (Length: 125)

Name: Solexa-NF5887-37
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5887-37
Solexa-NF5887-37
[»] chr3 (6 HSPs)
chr3 (29-125)||(10517074-10517170)
chr3 (29-125)||(11782366-11782462)
chr3 (29-84)||(10500163-10500218)
chr3 (29-69)||(10541560-10541600)
chr3 (29-73)||(11768820-11768864)
chr3 (30-69)||(10526946-10526985)
[»] chr4 (1 HSPs)
chr4 (29-125)||(17853307-17853403)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 6e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 6e-41
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 10517074 - 10517170
Alignment:
Q  29 gatgacttgaaagacgcaatctttgattctgaagatttgctcgatttcataagctaccatgtcctgaggtccacggtggagaaaacgccagttgatc 125  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10517074 gatgacttgaaagatgcaatctttgattctgaagatttgctagatttaataagctaccatgtcctgaggtccacggtggagaaaacgccagttgatc 10517170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 11782462 - 11782366
Alignment:
Q  29 gatgacttgaaagacgcaatctttgattctgaagatttgctcgatttcataagctaccatgtcctgaggtccacggtggagaaaacgccagttgatc 125  Q
    |||||||||||||| ||||| |||||| ||||||||||||| || || ||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  11782462 gatgacttgaaagatgcaatatttgatgctgaagatttgcttgacttaataagctaccatgtcctgaagtccacggtggagaaaacaccagttgatc 11782366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 10500163 - 10500218
Alignment:
Q  29 gatgacttgaaagacgcaatctttgattctgaagatttgctcgatttcataagcta 84  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| || ||||||||    
T  10500163 gatgacttgaaagacacaatctttgatgctgaagatttgctcgacttaataagcta 10500218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 10541560 - 10541600
Alignment:
Q  29 gatgacttgaaagacgcaatctttgattctgaagatttgct 69  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  10541560 gatgacttgaaagatgcaatctttgatgctgaagatttgct 10541600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 11768820 - 11768864
Alignment:
Q  29 gatgacttgaaagacgcaatctttgattctgaagatttgctcgat 73  Q
    ||||||||||||||||| ||||||||| |||| ||||| ||||||    
T  11768820 gatgacttgaaagacgctatctttgatgctgaggatttactcgat 11768864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 10526946 - 10526985
Alignment:
Q  30 atgacttgaaagacgcaatctttgattctgaagatttgct 69  Q
    ||||||||||||| ||||| |||||| |||||||||||||    
T  10526946 atgacttgaaagatgcaatatttgatgctgaagatttgct 10526985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 17853403 - 17853307
Alignment:
Q  29 gatgacttgaaagacgcaatctttgattctgaagatttgctcgatttcataagctaccatgtcctgaggtccacggtggagaaaacgccagttgatc 125  Q
    ||||| ||||||||||| ||||||||  | |||||| |||||||||| || | |||| ||| | |||||| || |||||||||||| ||||||||||    
T  17853403 gatgatttgaaagacgctatctttgacacggaagatctgctcgatttaatcaactacgatgccttgaggtgcaaggtggagaaaacaccagttgatc 17853307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University