View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5887-4 (Length: 197)
Name: Solexa-NF5887-4
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5887-4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 43343793 - 43343979
Alignment:
| Q |
8 |
aaatcataaccttccttgctaattctttcacgttgccttcattatctccttcatactttcttccaagagtacatttacaaacaatattatttgatgttga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43343793 |
aaatcataaccttccttgctaattctttcacgttgccttcattatctccttcatactttcttccaagagtacatttacaaacaatattatttgatgttga |
43343892 |
T |
|
| Q |
108 |
aataatcatctcacttaaattcacacattcatcattcaagctagcttcgcgtaacttattaaccaattcgtcaacttcttcttctct |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43343893 |
aataatcatctcacttaaattcacacattcatcattcaagctagcttcgcgtaacttattaaccaattcgtcaacttcttcttctct |
43343979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 190
Target Start/End: Original strand, 43360761 - 43360901
Alignment:
| Q |
50 |
tatctccttcatactttcttccaagagtacatttacaaacaatattatttgatgttgaaataatcatctcacttaaattcacacattcatcattcaagct |
149 |
Q |
| |
|
|||||||| |||| || |||||||||| ||| ||||| |||||| |||| ||| | ||| || || |||||||||||||||| ||||||| |||| |
|
|
| T |
43360761 |
tatctcctccatatttccttccaagagagcatgcacaaataatattgtttgtagtttcagtaagcaacttacttaaattcacacatgcatcatttgagct |
43360860 |
T |
|
| Q |
150 |
agcttcgcgtaacttattaaccaattcgtcaacttcttctt |
190 |
Q |
| |
|
|||||| |||| ||| | |||||||| |||||| |||||| |
|
|
| T |
43360861 |
agcttcacgtagtttactcaccaattcctcaactacttctt |
43360901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University