View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5887-8 (Length: 269)
Name: Solexa-NF5887-8
Description: NF5887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5887-8 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 4177850 - 4178082
Alignment:
| Q |
1 |
tatcagagatggtggtgtaattaatggtataccaaaaaatgaagaatccaaacttggaaaaggtctttggctcaactctaataagtgcttattagattgc |
100 |
Q |
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| T |
4177850 |
tatcagagatggtggtgtaattaatggtataccaaaaaatgaagaatccaaacttggaaaaggtctttggctcaactctaataagtgcttattagattgc |
4177949 |
T |
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| Q |
101 |
aacagcttcttaaagtttacttcaggaggaaattcaaggtagtgtctcctgcatgatataaataaaatcaatcatgtgtgtgacattaaaaatagttacg |
200 |
Q |
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| T |
4177950 |
aacagcttcttaaagtttactttaggaggaaattcaaggtagtgtctcctgcatgatataaataaaatcaatcatgtgtgtgacattataaatagttacg |
4178049 |
T |
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| Q |
201 |
atcaaagtctaacattttctatgatgtgacgat |
233 |
Q |
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| T |
4178050 |
atcaaagtctaacattttttatgatgtgacgat |
4178082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 4078199 - 4078045
Alignment:
| Q |
1 |
tatcagagatggtggtgtaattaatggtataccaaaaaatgaagaatccaaacttggaaaaggtctttggctcaactctaataagtgcttattagattgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078199 |
tatcagagatggtggtgtaattaatggtataccaaaaaatgaagaatccaaacttggaaaaggtctttggctcaactctaataagtgcttattagattgc |
4078100 |
T |
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| Q |
101 |
aacagcttcttaaagtttacttcaggaggaaattcaaggtagtgtctcctgcatg |
155 |
Q |
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| T |
4078099 |
aacagcttcttaaagtttactccaggaggaaattcaagatagtgtctcctgcatg |
4078045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 4077997 - 4077924
Alignment:
| Q |
160 |
aaataaaatcaatcatgtgtgtgacattaaaaatagttacgatcaaagtctaacattttctatgatgtgacgat |
233 |
Q |
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| T |
4077997 |
aaataaaatcaatcatatgtgtgacattaaaaatagttacgatcaaagtctaacattttttatgatgtgacgat |
4077924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 33657474 - 33657402
Alignment:
| Q |
180 |
gtgacattaaaaatagttacgatcaaagtctaacattttctatgatgtgacgattatcattgatcgatagtgt |
252 |
Q |
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| T |
33657474 |
gtgactttaaaaatagttatggttaaagtcaaatattttcaatgatttgacggttatgattgattgatagtgt |
33657402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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