View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5889-1 (Length: 297)
Name: Solexa-NF5889-1
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5889-1 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 14673067 - 14672768
Alignment:
| Q |
1 |
caaagggatatggactttttgaatgaatcttgagcgattatgcctgagttggaagtgaaacaaaaagatgatgagatagcttgcaaagacaaaagtacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14673067 |
caaagggatatggactttttgaatgaatcttgagcgattatgcctgagttggaagtgaaacaaaaagatgatgagatagcttgcaaagacaaaagtacta |
14672968 |
T |
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| Q |
101 |
gcaatgatgattcaacaactgatatagctttcaagaagttttgtctagatcagcaaagaaggcacnnnnnnngaagatagctcagaaaagtaactatagt |
200 |
Q |
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| T |
14672967 |
gcaatgatgattcaacaactgatatagctttcaagaagttttgtctagatcagcaaagaaggcacaaaaaaagaagatagctcagaaaagtaactatagt |
14672868 |
T |
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| Q |
201 |
accatgtcaatggtaggcagtaaaattgttccaccatgaagtgtcttttctggaatgttagaggtttggctaactcccct---gcattgaaaaggttaat |
297 |
Q |
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| T |
14672867 |
accatgtcaatggtaggcagtaaaattgttccaccatgaagtgtcttttctggaatgttagaggtttggctaactcccctttagcattgaaaaggttaat |
14672768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 17670983 - 17671280
Alignment:
| Q |
1 |
caaagggatatggactttttgaatgaatcttgagcgattatgcctgagttggaagtgaaacaaaaagatgatgagatagcttgcaaagacaaaagtacta |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17670983 |
caaaaggatatggactttttgaatgaatcttgagcgaatatgcctgagttggaagggaaacaaaaagatgatgagatagcttgcaaagacaaaagtacta |
17671082 |
T |
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| Q |
101 |
gcaatgatgattcaacaactgatatagctttcaagaagttttgtctagatcagcaaagaaggcacnnnnnnngaagatagctcagaaaagtaactatagt |
200 |
Q |
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| T |
17671083 |
gcaatgatgattcaacaactg--atagctttcaagaagttttgtctagatcagcaaagaaggcacaaaaaaagaagatagctcagaaaagtaactatagt |
17671180 |
T |
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| Q |
201 |
accatgtcaatggtaggcagtaaaattgttccaccatgaagtgtcttttctggaatgttagaggtttggctaactcccct---gcattgaaaaggttaat |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
17671181 |
accatgtcaatggtaggcagtaaaattgttccaccatgaagtgtcttttctggaatgttagaggtttggctaacttccctttagcattgaaaaggttaat |
17671280 |
T |
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