View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5889-15 (Length: 140)
Name: Solexa-NF5889-15
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5889-15 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 9e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 9e-68
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 14672540 - 14672673
Alignment:
| Q |
7 |
aaaagagtggaacaagagatagaagagcacatatccatccatttctggttgcatatagctttgtccagtctcttttcagtcagatgtgaaccaaagattt |
106 |
Q |
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| T |
14672540 |
aaaagagtggaacaagagatagaagagcacatatccatccatttctggttgcatatagctttgtctagtctcttttcagtcagatgtgaaccaaagattt |
14672639 |
T |
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| Q |
107 |
ggagctaaactatctctatcatcgacatcgaata |
140 |
Q |
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| T |
14672640 |
ggagctaaactatctctatcatcgacatcgaata |
14672673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 6e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 6e-63
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 17671508 - 17671375
Alignment:
| Q |
7 |
aaaagagtggaacaagagatagaagagcacatatccatccatttctggttgcatatagctttgtccagtctcttttcagtcagatgtgaaccaaagattt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17671508 |
aaaagagtggaacaagagatagaagagcacatatccatccatttctgtttgcatatagctttgtctagtctcttttcagtcagatgtgaaccaaagattt |
17671409 |
T |
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| Q |
107 |
ggagctaaactatctctatcatcgacatcgaata |
140 |
Q |
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| T |
17671408 |
ggagctaaactatctctatcatcaacatcgaata |
17671375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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