View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5889-2 (Length: 226)
Name: Solexa-NF5889-2
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5889-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 39784789 - 39784570
Alignment:
| Q |
7 |
atataccacttcgttttctgtgtctttaaagggnnnnnnngaatcttaaattcttacataacagttttgttttgtttaatctccaacagtatataatagc |
106 |
Q |
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| T |
39784789 |
atataccacttcgttttctgtgtctttaaagggaaaaaaagaatcttaaattcttacataacagttttgttttgtttaatctccaacagtatataatagc |
39784690 |
T |
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| Q |
107 |
cagagcttgatggggaatgtgagagcatattagcagagttttcatcaaattttaaaaaggttgtccctcaagnnnnnnngaaaagattaaggaagagttt |
206 |
Q |
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| T |
39784689 |
cagagcttgatggggaatgtgagagcatattagcagagttttcatcaaattttaaaaaggttgtccctcaagtttttttgaaaagattaaggaagagttt |
39784590 |
T |
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| Q |
207 |
cttgctttttcttcagagat |
226 |
Q |
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|||||||||||||||||||| |
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| T |
39784589 |
cttgctttttcttcagagat |
39784570 |
T |
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