View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5889-20 (Length: 136)

Name: Solexa-NF5889-20
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5889-20
Solexa-NF5889-20
[»] chr4 (1 HSPs)
chr4 (1-134)||(38620669-38620800)
[»] chr1 (1 HSPs)
chr1 (1-80)||(46903331-46903410)
[»] chr7 (2 HSPs)
chr7 (2-80)||(7744538-7744616)
chr7 (2-80)||(12543327-12543405)
[»] chr8 (2 HSPs)
chr8 (2-80)||(1080903-1080981)
chr8 (2-80)||(24917477-24917555)
[»] chr6 (1 HSPs)
chr6 (2-80)||(15339463-15339541)
[»] chr3 (1 HSPs)
chr3 (23-80)||(53281534-53281591)


Alignment Details
Target: chr4 (Bit Score: 74; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 38620800 - 38620669
Alignment:
Q  1 agagaagaaagggtggtctacaagagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaatactcttgccactttgggggtttacattgggg 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||  || |||| |||||| |||    
T  38620800 agagaagaaagggtggtctacgagagagaagagggtgaaaacaataaagctctgtgaaattaccaaaatagccttgccac-atgagggtgtacatt-ggg 38620703  T
Q  101 gtatacagggatgtgtgtctatgtatatttttcc 134  Q
    || |||| ||| |||||||||||||| |||||||    
T  38620702 gtgtacatggaagtgtgtctatgtatctttttcc 38620669  T

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Target: chr1 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 46903331 - 46903410
Alignment:
Q  1 agagaagaaagggtggtctacaagagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaatactcttgccac 80  Q
    ||||||||||||||||||||| | |||||||||| |||||||||||||| ||||||||||||||||||||  ||||||||    
T  46903331 agagaagaaagggtggtctacgatagagaagaggttgaaaacaataaagttgtgtgaaattaccaaaatagccttgccac 46903410  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 7744616 - 7744538
Alignment:
Q  2 gagaagaaagggtggtctacaagagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaatactcttgccac 80  Q
    |||||||||||| | ||||  |||||||||||||||| ||  | |||||||||||||||| ||||||||| | ||||||    
T  7744616 gagaagaaagggagatctaagagagagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccac 7744538  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 12543327 - 12543405
Alignment:
Q  2 gagaagaaagggtggtctacaagagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaatactcttgccac 80  Q
    |||||||||||| | ||||  |||||||||||||||| ||  | |||||||| ||||||| ||||||||| | ||||||    
T  12543327 gagaagaaagggagatctaagagagagaagagggtgagaaagagaaagctgtttgaaatttccaaaatacccatgccac 12543405  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 1080981 - 1080903
Alignment:
Q  2 gagaagaaagggtggtctacaagagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaatactcttgccac 80  Q
    |||||||||||  | ||||  |||||||||||||||| ||  | |||||||||||||||| ||||||||| | ||||||    
T  1080981 gagaagaaaggtagatctaagagagagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccac 1080903  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 24917555 - 24917477
Alignment:
Q  2 gagaagaaagggtggtctacaagagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaatactcttgccac 80  Q
    |||||||||||  | ||||  |||||||||||||||| ||  | |||||||||||||||| ||||||||| | ||||||    
T  24917555 gagaagaaaggtagatctaagagagagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccac 24917477  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 15339541 - 15339463
Alignment:
Q  2 gagaagaaagggtggtctacaagagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaatactcttgccac 80  Q
    |||||||||||  | ||||  |||||||||||||||| ||  | |||||||||||||||| ||||||||| | ||||||    
T  15339541 gagaagaaaggtagatctaagagagagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccac 15339463  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 53281534 - 53281591
Alignment:
Q  23 agagagaagagggtgaaaacaataaagctgtgtgaaattaccaaaatactcttgccac 80  Q
    |||||||||||||||| ||  | |||||||||||||||| ||||||||| | ||||||    
T  53281534 agagagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccac 53281591  T

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