View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5889-24 (Length: 128)
Name: Solexa-NF5889-24
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5889-24 |
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Alignment Details
Target: chr6 (Bit Score: 56; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 658750 - 658805
Alignment:
| Q |
1 |
atgaaactgaggctggaggctgatatacaataaatctacaaggaggttttcttgtt |
56 |
Q |
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| T |
658750 |
atgaaactgaggctggaggctgatatacaataaatctacaaggaggttttcttgtt |
658805 |
T |
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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 658842 - 658877
Alignment:
| Q |
93 |
cttcaactgcaaacagtgcaactccaaccattggag |
128 |
Q |
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| T |
658842 |
cttcaactgcaaacagtgcaactccaaccattggag |
658877 |
T |
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