View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5889-29 (Length: 127)
Name: Solexa-NF5889-29
Description: NF5889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5889-29 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 1e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 11730024 - 11730144
Alignment:
| Q |
7 |
aatttgtactatgaattgtggtatttgttggatgaatattggcgtcgtattaaagcctatttaattatattgaatttgtacttggcattgcattaattaa |
106 |
Q |
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| T |
11730024 |
aatttgtactatgaatagtggtatttgttggatgaatattggcgtcgtattaaagcctatttaattatattgaatttgtacttggcattgcattaattaa |
11730123 |
T |
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| Q |
107 |
gactgcgttcccacaagcaca |
127 |
Q |
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| T |
11730124 |
ggctgcgttcccacaagcaca |
11730144 |
T |
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Target: chr2; HSP #2
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 11720864 - 11720939
Alignment:
| Q |
7 |
aatttgtactatgaattgtggtatttgttggatgaatattggcgtcgtattaaagcctatttaattatattgaatttgtac |
87 |
Q |
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| T |
11720864 |
aatttgtactatgaattgtggtatttg-tggatgaatattggcatcgtattaaggcctat----ttatattgaatttgtac |
11720939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 11712234 - 11712180
Alignment:
| Q |
7 |
aatttgtactatgaattgtggtatttgttggatgaatattggcgtcgtattaaagc |
62 |
Q |
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| T |
11712234 |
aatttgtattatgaattgcggtatttgt-ggatgaatattggcttcgtattaaagc |
11712180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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